Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J5M87_RS04600 Genome accession   NZ_CP072115
Coordinates   957030..958259 (+) Length   409 a.a.
NCBI ID   WP_154608588.1    Uniprot ID   A0A6I4RRA5
Organism   Streptococcus zhangguiae strain zg-86     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 952030..963259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5M87_RS04575 (J5M87_04575) - 952200..954272 (+) 2073 WP_154608592.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  J5M87_RS04580 (J5M87_04580) - 954411..955253 (+) 843 WP_154608591.1 aldo/keto reductase -
  J5M87_RS04585 (J5M87_04585) - 955374..956213 (+) 840 WP_154608590.1 thymidylate synthase -
  J5M87_RS04590 (J5M87_04590) - 956320..956832 (+) 513 WP_154608589.1 dihydrofolate reductase -
  J5M87_RS04595 (J5M87_04595) - 956836..957006 (+) 171 WP_099092175.1 hypothetical protein -
  J5M87_RS04600 (J5M87_04600) clpX 957030..958259 (+) 1230 WP_154608588.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  J5M87_RS04605 (J5M87_04605) yihA 958268..958855 (+) 588 WP_067090585.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  J5M87_RS04610 (J5M87_04610) rplJ 959106..959606 (+) 501 WP_067090582.1 50S ribosomal protein L10 -
  J5M87_RS04615 (J5M87_04615) rplL 959680..960048 (+) 369 WP_154608587.1 50S ribosomal protein L7/L12 -
  J5M87_RS04620 (J5M87_04620) - 960193..960954 (+) 762 WP_154608586.1 DeoR/GlpR family DNA-binding transcription regulator -
  J5M87_RS04625 (J5M87_04625) lacA 961226..961648 (+) 423 WP_154608585.1 galactose-6-phosphate isomerase subunit LacA -
  J5M87_RS04630 (J5M87_04630) lacB 961679..962194 (+) 516 WP_154608584.1 galactose-6-phosphate isomerase subunit LacB -
  J5M87_RS04635 (J5M87_04635) lacD 962224..963219 (+) 996 WP_154608583.1 tagatose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45658.25 Da        Isoelectric Point: 4.6189

>NTDB_id=550537 J5M87_RS04600 WP_154608588.1 957030..958259(+) (clpX) [Streptococcus zhangguiae strain zg-86]
MTVHHHPSELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLTILNHYVIGQDR
AKRALAVAVYNHYKRINFQDSREEDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQLDTK
NILFIVGGAFDGIEEIVKQRMGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTIDDLIRI
LTEPKNALVKQYQTLLSYDGVELEFDKEALEEIANKAIERKTGARGLRSIIEETMLDVMFEIPSQDEVKRVRITKDAVDG
KAEPILERA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=550537 J5M87_RS04600 WP_154608588.1 957030..958259(+) (clpX) [Streptococcus zhangguiae strain zg-86]
ATGACAGTACACCACCACCCATCAGAGCTTATCTACTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTTAAAAAAATTAT
TGCAGGAAACAATGTCTTTATCTGTAATGAATGTGTGGAATTAGCCCAGGAAATTATCCGTGAAGAATTAGCAGAAGAAG
TCTTGACTGATTTAGCGGATACGCCAAAACCACAGGAATTACTCACTATTTTGAACCATTACGTTATCGGACAAGACCGT
GCCAAACGTGCCTTGGCCGTAGCCGTATATAATCACTACAAACGGATTAATTTTCAAGATAGCCGTGAGGAGGATGATGT
TGATTTGCAAAAATCAAATATCCTCATGATTGGGCCAACCGGATCTGGTAAGACTTTTCTTGCTCAAACCTTAGCGAAGA
GTTTGAATGTCCCATTTGCCATTGCCGATGCAACAGCCTTGACAGAAGCAGGCTATGTAGGAGAAGATGTTGAAAATATT
CTCCTAAAACTCTTACAGGCAGCAGATTTTAATATTGACCGTGCAGAACGCGGTATTATCTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAGAATGTCTCGATTACCCGTGATGTTTCTGGTGAAGGTGTTCAGCAGGCCCTTCTGAAAATTA
TAGAAGGAACTGTTGCAAGTGTACCACCACAGGGTGGTCGCAAGCATCCACAGCAGGAAATGATTCAATTGGATACCAAA
AATATTCTCTTTATCGTTGGGGGTGCCTTTGATGGTATTGAAGAAATTGTCAAGCAACGTATGGGTGAAAAAATTATTGG
TTTTGGTCACAATAACCGTGCCATTGATGAAAAAGAATCCTACATGCAGCACATCATAGCTGATGATATTCAAAAATTTG
GTATTATTCCAGAGTTAATTGGTCGCCTACCCGTTTTTGCAGCCCTAGATCAGTTGACGATTGATGATTTGATTCGGATT
TTAACAGAGCCGAAAAACGCTCTTGTTAAGCAATACCAAACCTTGTTATCTTACGATGGTGTCGAGTTGGAATTTGACAA
GGAAGCGCTCGAAGAAATTGCAAATAAAGCAATTGAGCGAAAGACAGGTGCTCGTGGTTTACGCTCTATTATTGAAGAAA
CCATGCTAGATGTGATGTTCGAAATACCGAGTCAGGACGAAGTCAAGCGCGTGCGGATTACCAAAGACGCAGTTGATGGC
AAGGCAGAGCCAATCCTAGAAAGGGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4RRA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.464

97.555

0.834
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.289

0.562