Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CYAN10605_RS14685 Genome accession   NC_019776
Coordinates   3504232..3506991 (-) Length   919 a.a.
NCBI ID   WP_015220732.1    Uniprot ID   K9Z9E4
Organism   Cyanobacterium aponinum PCC 10605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499232..3511991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN10605_RS14660 (Cyan10605_2946) - 3500231..3500863 (+) 633 WP_015220727.1 ribonuclease HII -
  CYAN10605_RS14665 (Cyan10605_2947) - 3500944..3501465 (+) 522 WP_015220728.1 cofactor assembly of complex C subunit B -
  CYAN10605_RS14670 (Cyan10605_2948) - 3501469..3502221 (+) 753 WP_015220729.1 hypothetical protein -
  CYAN10605_RS14675 (Cyan10605_2949) - 3502430..3503305 (-) 876 WP_015220730.1 ion channel -
  CYAN10605_RS14680 (Cyan10605_2950) - 3503360..3504124 (-) 765 WP_015220731.1 MlaE family lipid ABC transporter permease subunit -
  CYAN10605_RS14685 (Cyan10605_2951) pilJ 3504232..3506991 (-) 2760 WP_015220732.1 methyl-accepting chemotaxis protein Machinery gene
  CYAN10605_RS14690 (Cyan10605_2952) - 3507057..3507593 (-) 537 WP_015220733.1 chemotaxis protein CheW -
  CYAN10605_RS14695 (Cyan10605_2953) pilH 3507841..3508206 (-) 366 WP_015220734.1 response regulator transcription factor Machinery gene
  CYAN10605_RS14700 (Cyan10605_2954) hpnH 3508439..3509452 (-) 1014 WP_015220735.1 adenosyl-hopene transferase HpnH -
  CYAN10605_RS14705 (Cyan10605_2955) murA 3509536..3510840 (-) 1305 WP_083887266.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CYAN10605_RS14710 (Cyan10605_2956) ruvX 3511548..3511979 (-) 432 WP_015220737.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 101638.90 Da        Isoelectric Point: 3.8176

>NTDB_id=55044 CYAN10605_RS14685 WP_015220732.1 3504232..3506991(-) (pilJ) [Cyanobacterium aponinum PCC 10605]
MVSETDYQERFKQARTAYLEGDLAEASFITDGIMDDYPDDPSAFLLKGHIHLRQQEYDLAQVNYQKVLDLTDHQDLVTLA
KQGLAEIEEDSEDQSLYPPEVEEPDFDDEVEEIGDDDDDNWTSSIQFDSIDWDIDDLEEEEIEDPTLQQNSPFDQSFSKN
SNNPPPTLSKSEKRTEQKKSGDDDEQDEDDTAANFIDPSLDENNFDDDINLDSASNDLLSFDFDNADIDYEQFESDSNDE
DLNQDEMQDTGAPTFVVSSEDEPELSDLEQMLTGETGFLNDLDDDLGDYSSQLEPLTAGKTSTNTGLNLEDDNMPLVPEG
EEDLFFAPDELDDIPDIDADELPVSSIFTKDNKPEQIFPNVIETDENVFDSDFDNEITGSFSFDTDKINLDLEEDISVSS
SLGDISGISSSIAINPEVEVPQGKLAKYYNFSLFTKQLVHGGVTGVVTFVIVLMVSLFQGGVKNIENTSVTTTESGAETT
EQTQETRETQEIPLPFSRTLLLSLIAGISGGASTIAMGYLMTNHIKRYTNDLQNHFESIYQGDYEIKATVYSQDEFGTLA
AGFNQMTKMIYTTTTEARKRAEETERAREDLQRQVIRLLDDVEGASRGDLTVQAEVTADVLGAVADAFNVTITNLRKIVK
QVQQAAVQVNKASTDSEVFARNQSSDALRMAEELAVTLNSVQMMTDSIQRVAENAREAEEVARSSSVTALKGGDAVERTV
AGILQIRETVSETTRKVKRLAEASQQISTIVAVISQISSRTNLLALNASIQAARAGEAGRGFAIVADEVRQLADRSAKSL
QEIEQIVLQIQTETGSVMTAMEEGIQQVRDVTERSEQAKRALEDIIQVSNRIDALVRSITADTDEQRENSRGVAKVMQAV
ELTAQATSQESQRVAGSLQNLVGIAKDLISSVERFRVDD

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=55044 CYAN10605_RS14685 WP_015220732.1 3504232..3506991(-) (pilJ) [Cyanobacterium aponinum PCC 10605]
ATGGTATCAGAAACCGATTATCAAGAAAGATTTAAACAAGCTCGTACCGCTTATTTAGAAGGAGATTTAGCAGAAGCGTC
CTTCATTACTGATGGTATTATGGATGACTATCCAGATGATCCTAGTGCATTCTTACTAAAAGGTCATATTCATCTACGAC
AACAAGAATATGATTTAGCTCAAGTTAATTATCAAAAAGTCTTGGATTTAACAGATCATCAAGATTTAGTGACATTGGCT
AAACAAGGACTGGCAGAAATAGAAGAAGATAGCGAAGATCAATCTCTGTATCCTCCAGAGGTAGAAGAGCCAGATTTTGA
CGATGAAGTGGAAGAAATCGGTGACGATGATGATGATAATTGGACAAGCAGTATCCAATTTGACAGTATTGATTGGGATA
TAGATGATTTAGAAGAAGAAGAAATAGAAGATCCCACCCTACAGCAAAATTCTCCCTTTGATCAAAGTTTCTCTAAAAAT
TCCAATAATCCTCCCCCCACATTGAGTAAAAGTGAAAAACGCACAGAGCAAAAAAAATCAGGGGATGATGATGAACAGGA
TGAAGATGACACTGCCGCCAATTTTATTGACCCCTCTTTGGACGAAAACAATTTTGACGATGATATAAATTTAGATAGTG
CATCTAATGATTTGTTGAGCTTTGATTTTGATAATGCTGATATAGATTATGAACAGTTTGAAAGTGATTCTAATGATGAA
GATCTAAATCAAGATGAAATGCAAGATACAGGAGCTCCCACTTTTGTTGTGTCTAGTGAAGATGAACCTGAATTGAGCGA
TTTAGAACAAATGTTGACGGGGGAGACTGGTTTCCTTAATGATTTAGATGATGACTTGGGAGATTACAGTTCTCAGTTAG
AACCTTTAACTGCTGGTAAAACTTCAACTAATACGGGATTAAATTTAGAGGATGATAATATGCCTCTCGTACCCGAAGGA
GAAGAAGATTTATTTTTTGCCCCCGATGAGTTAGATGATATTCCCGACATTGATGCTGATGAGTTGCCAGTTTCGAGCAT
TTTTACAAAGGATAATAAACCAGAGCAGATATTTCCCAATGTTATAGAAACAGATGAGAATGTTTTTGATAGCGATTTTG
ATAATGAAATTACAGGTAGTTTTTCCTTTGATACAGACAAAATTAATTTAGATTTGGAAGAAGATATAAGTGTTTCTTCT
TCTTTAGGAGATATTTCTGGCATATCCTCGTCTATTGCTATTAATCCAGAAGTAGAAGTTCCCCAAGGAAAACTTGCCAA
ATATTATAATTTTTCCCTATTCACTAAACAATTAGTACATGGTGGTGTTACAGGAGTTGTTACTTTTGTGATTGTGTTAA
TGGTAAGTTTGTTTCAAGGGGGAGTTAAGAATATAGAAAATACAAGTGTGACGACTACTGAATCTGGAGCAGAAACGACC
GAACAAACTCAAGAAACAAGGGAAACTCAAGAAATACCATTGCCTTTTTCTCGGACATTGTTGTTAAGTTTAATCGCTGG
TATTAGTGGTGGAGCTTCTACCATTGCAATGGGTTATTTGATGACTAATCACATTAAACGCTATACCAATGACTTGCAAA
ATCACTTTGAATCCATTTATCAGGGTGATTATGAGATAAAAGCAACGGTTTATTCTCAAGATGAATTTGGTACTTTAGCT
GCTGGTTTTAATCAGATGACAAAAATGATTTATACCACTACCACAGAGGCGAGAAAGAGGGCTGAAGAGACGGAGAGAGC
AAGGGAGGATTTACAAAGACAGGTTATTCGTCTTCTTGATGATGTGGAAGGAGCTTCTAGGGGTGATTTAACGGTACAAG
CTGAGGTAACAGCAGACGTATTAGGGGCGGTAGCGGATGCTTTCAACGTGACTATTACTAACTTGCGGAAAATCGTTAAA
CAGGTACAACAGGCGGCGGTACAGGTTAACAAAGCAAGTACTGATAGTGAGGTGTTTGCTCGTAATCAATCGAGTGATGC
GTTGCGGATGGCGGAAGAATTGGCCGTTACGTTAAATTCTGTTCAGATGATGACAGATTCAATTCAGAGGGTGGCAGAAA
ACGCCAGAGAAGCGGAAGAGGTGGCCCGTTCCTCTAGTGTTACGGCTTTAAAGGGTGGTGATGCGGTAGAAAGAACTGTT
GCTGGTATTTTGCAGATTAGGGAAACAGTATCAGAAACAACCCGTAAGGTAAAAAGATTGGCAGAGGCATCCCAACAAAT
TTCAACGATTGTGGCTGTTATTTCTCAGATTTCTTCTCGTACCAACCTATTAGCTTTAAATGCTTCTATTCAGGCCGCAA
GGGCAGGAGAGGCGGGGAGAGGATTTGCGATCGTTGCTGATGAGGTACGACAGTTAGCAGATAGATCAGCAAAATCCTTG
CAGGAAATTGAACAAATTGTATTACAAATTCAAACAGAAACTGGTTCAGTTATGACGGCGATGGAAGAGGGTATTCAACA
GGTAAGAGATGTAACCGAGAGGTCTGAACAGGCAAAACGGGCATTGGAAGATATTATTCAAGTGTCCAATCGTATTGATG
CCTTGGTGCGATCGATTACAGCAGATACTGATGAGCAGAGAGAAAATTCCCGAGGAGTAGCAAAAGTAATGCAGGCGGTT
GAATTGACAGCTCAGGCAACTTCTCAAGAATCTCAGAGAGTAGCTGGTTCTTTGCAAAATTTGGTGGGCATTGCCAAAGA
TTTAATTTCCTCTGTGGAACGTTTTAGGGTTGATGATTAG

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(700-881)

HAMP domain (HAMP)

(521-570)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9Z9E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

47.564

100

0.489

Multiple sequence alignment