Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J5V93_RS19520 Genome accession   NZ_CP072061
Coordinates   3856406..3858145 (-) Length   579 a.a.
NCBI ID   WP_002088564.1    Uniprot ID   R8I3K9
Organism   Bacillus mycoides strain JAS06/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3851406..3863145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS19490 (J5V93_19490) - 3851601..3851834 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  J5V93_RS19495 (J5V93_19495) - 3851886..3852614 (-) 729 WP_002033957.1 glycerophosphodiester phosphodiesterase -
  J5V93_RS19500 (J5V93_19500) - 3852665..3852811 (+) 147 WP_097830737.1 YycC family protein -
  J5V93_RS19505 (J5V93_19505) - 3853052..3853615 (-) 564 WP_002167694.1 PRK06770 family protein -
  J5V93_RS19510 (J5V93_19510) spo0A 3853913..3854707 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  J5V93_RS19515 (J5V93_19515) spoIVB 3854994..3856286 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  J5V93_RS19520 (J5V93_19520) recN 3856406..3858145 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  J5V93_RS19525 (J5V93_19525) argR 3858416..3858865 (-) 450 WP_002015076.1 arginine repressor ArgR -
  J5V93_RS19530 (J5V93_19530) - 3859008..3859847 (-) 840 WP_002015074.1 TlyA family RNA methyltransferase -
  J5V93_RS19535 (J5V93_19535) dxs 3859851..3861743 (-) 1893 WP_002129043.1 1-deoxy-D-xylulose-5-phosphate synthase -
  J5V93_RS19540 (J5V93_19540) ispA 3862052..3862945 (-) 894 WP_002129045.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65667.92 Da        Isoelectric Point: 5.1569

>NTDB_id=550338 J5V93_RS19520 WP_002088564.1 3856406..3858145(-) (recN) [Bacillus mycoides strain JAS06/1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=550338 J5V93_RS19520 WP_002088564.1 3856406..3858145(-) (recN) [Bacillus mycoides strain JAS06/1]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGCTTATTCTATGTGGAAGATGACAAACATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCATATATCAAAATGTATATACAGACTACGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAAAGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCAAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599