Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   J5V93_RS19510 Genome accession   NZ_CP072061
Coordinates   3853913..3854707 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain JAS06/1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3848913..3859707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS19485 (J5V93_19485) - 3849391..3851463 (-) 2073 WP_002129032.1 sigma 54-interacting transcriptional regulator -
  J5V93_RS19490 (J5V93_19490) - 3851601..3851834 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  J5V93_RS19495 (J5V93_19495) - 3851886..3852614 (-) 729 WP_002033957.1 glycerophosphodiester phosphodiesterase -
  J5V93_RS19500 (J5V93_19500) - 3852665..3852811 (+) 147 WP_097830737.1 YycC family protein -
  J5V93_RS19505 (J5V93_19505) - 3853052..3853615 (-) 564 WP_002167694.1 PRK06770 family protein -
  J5V93_RS19510 (J5V93_19510) spo0A 3853913..3854707 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  J5V93_RS19515 (J5V93_19515) spoIVB 3854994..3856286 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  J5V93_RS19520 (J5V93_19520) recN 3856406..3858145 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  J5V93_RS19525 (J5V93_19525) argR 3858416..3858865 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=550337 J5V93_RS19510 WP_002015081.1 3853913..3854707(-) (spo0A) [Bacillus mycoides strain JAS06/1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=550337 J5V93_RS19510 WP_002015081.1 3853913..3854707(-) (spo0A) [Bacillus mycoides strain JAS06/1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818