Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LT922_RS17420 Genome accession   NZ_CP089445
Coordinates   3561145..3561882 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 5-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556145..3566882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT922_RS17405 (LT922_17405) clpC 3556599..3559172 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LT922_RS17410 (LT922_17410) yfiH 3559302..3560033 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  LT922_RS17415 (LT922_17415) rluD 3560030..3561010 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LT922_RS17420 (LT922_17420) comL 3561145..3561882 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LT922_RS17425 (LT922_17425) raiA 3562152..3562493 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LT922_RS17430 (LT922_17430) pheL 3562597..3562644 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LT922_RS17435 (LT922_17435) pheA 3562743..3563903 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  LT922_RS17440 (LT922_17440) tyrA 3563946..3565067 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LT922_RS17445 (LT922_17445) aroF 3565078..3566148 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LT922_RS17450 (LT922_17450) yfiL 3566358..3566723 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=550176 LT922_RS17420 WP_000197686.1 3561145..3561882(+) (comL) [Escherichia coli strain 5-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=550176 LT922_RS17420 WP_000197686.1 3561145..3561882(+) (comL) [Escherichia coli strain 5-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376