Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LUX31_RS18415 Genome accession   NZ_CP089312
Coordinates   4154061..4155470 (+) Length   469 a.a.
NCBI ID   WP_235475870.1    Uniprot ID   -
Organism   Streptomyces sp. GQFP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149061..4160470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX31_RS18400 (LUX31_18400) - 4150135..4151079 (-) 945 WP_235475867.1 Ppx/GppA phosphatase family protein -
  LUX31_RS18405 (LUX31_18405) - 4151163..4152011 (+) 849 WP_235475868.1 hypothetical protein -
  LUX31_RS18410 (LUX31_18410) - 4152023..4153819 (-) 1797 WP_235475869.1 hypothetical protein -
  LUX31_RS18415 (LUX31_18415) radA/sms 4154061..4155470 (+) 1410 WP_235475870.1 DNA repair protein RadA Machinery gene
  LUX31_RS18420 (LUX31_18420) disA 4155552..4156676 (+) 1125 WP_235475871.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LUX31_RS18425 (LUX31_18425) - 4156696..4157559 (-) 864 WP_235475872.1 hypothetical protein -
  LUX31_RS18430 (LUX31_18430) - 4157968..4158885 (+) 918 WP_235475873.1 A/G-specific adenine glycosylase -
  LUX31_RS18435 (LUX31_18435) - 4159156..4159698 (+) 543 WP_235475874.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49683.84 Da        Isoelectric Point: 8.0022

>NTDB_id=550097 LUX31_RS18415 WP_235475870.1 4154061..4155470(+) (radA/sms) [Streptomyces sp. GQFP]
MAARTKTAKDRPSYRCTECGWQTVKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPEF
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYITGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAAGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPAGMKVIEVADMGDALQVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=550097 LUX31_RS18415 WP_235475870.1 4154061..4155470(+) (radA/sms) [Streptomyces sp. GQFP]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGACCGTCCTACCGCTGCACCGAGTGTGGCTGGCAGACGGTCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GTGTCACCACCTCCGCGCTCCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCCACCGGCGTACCCGAGTTC
GACCGCGTGCTCGGCGGTGGACTGGTCCCGGGGGCCGTGGTCCTGCTGGCCGGTGAACCGGGCGTCGGCAAGTCGACCCT
CCTCCTCGACGTGGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTACCTCGCGGCGGAGACGGACCTCGCGGCCGTCCTG
GGCCACCTGGACGCCGTCAAGCCGTCCCTCCTGATCCTCGACTCCGTCCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CGCGGGCGGCATGGCGCAGGTCCGTGAGGTCGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCGACGCTCC
TGGTGGGGCATGTCACCAAGGACGGCGCGATCGCGGGGCCACGCCTCCTGGAGCACCTGGTGGACGTGGTCCTGTCCTTC
GAGGGCGACCGCCATGCGCGCCTCCGCCTCGTGCGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACGCGGCGCGCCGAGCCGGTGCCCG
GGACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACTGTCGACTCGCAGATC
CCGTCCCCCCGGCGGACGACCTCGGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTTCTCGAACAACGGGGCAG
GATCAGCGCCCTCGGAAAGCGGGACATCTATTCGGCCACGGTGGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGTTGCCCAAAAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGAAGGGTGACGGGGGTCCAGCGCCGACTGGCCGAGGCCCACCGTCTGGGCTTCACCCACGCCCTCGT
TCCGTCCGATCCCGGCAAGATCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGATGCTCTCCAGGTGCTCC
CGAGGTCGCGTAGGCGAGAGGCCCCACGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401
  radA Streptococcus mitis SK321

44.131

90.832

0.401