Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4C32_RS19760 Genome accession   NZ_CP072011
Coordinates   4524785..4527019 (-) Length   744 a.a.
NCBI ID   WP_208554856.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain 3prime     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4519785..4532019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C32_RS19725 (C4C32_19725) murB 4520070..4521089 (-) 1020 WP_208554855.1 UDP-N-acetylmuramate dehydrogenase -
  C4C32_RS19730 (C4C32_19730) - 4521086..4521550 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  C4C32_RS19735 (C4C32_19735) kdsB 4521550..4522314 (-) 765 WP_053190745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4C32_RS19740 (C4C32_19740) - 4522311..4522496 (-) 186 WP_003179363.1 Trm112 family protein -
  C4C32_RS19745 (C4C32_19745) lpxK 4522520..4523530 (-) 1011 WP_024776921.1 tetraacyldisaccharide 4'-kinase -
  C4C32_RS19750 (C4C32_19750) - 4523530..4523958 (-) 429 WP_024776922.1 biopolymer transporter ExbD -
  C4C32_RS19755 (C4C32_19755) exbB 4523955..4524590 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4C32_RS19760 (C4C32_19760) comA 4524785..4527019 (-) 2235 WP_208554856.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4C32_RS19765 (C4C32_19765) - 4527165..4527680 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  C4C32_RS19770 (C4C32_19770) - 4527821..4528600 (-) 780 WP_024776926.1 ABC transporter permease -
  C4C32_RS19775 (C4C32_19775) - 4528597..4529529 (-) 933 WP_024776927.1 ABC transporter ATP-binding protein -
  C4C32_RS19780 (C4C32_19780) - 4529663..4530286 (-) 624 WP_053190737.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81373.43 Da        Isoelectric Point: 9.1942

>NTDB_id=549882 C4C32_RS19760 WP_208554856.1 4524785..4527019(-) (comA) [Pseudomonas corrugata strain 3prime]
MRTGWVALALGLVAPVFFPALPPLWLVSALPMLALMVLPFRMYPLGFFLLGLAWACLSAQFALDERLPALLDGETRWVEG
RVTGLPHYSDGVVRFDLVEARSRRTRLPTSMRLAWFGGAPVSSGEHWRLAVKLKRPAGLMNPHGFDHEAWLLSRGIGATG
TVKDGRRLQPAQGAWRDGVRQALAQVDAQGRSGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPGRLPWLPWACALAFFAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTVLLPVPFIGEALLWIAGGLLDLMFEGLALVAGRVPVWVPVPVPLWTWCIAALGAFVLLLPKGVPLRLLGWPMLLLMV
FAPREEVPSGRAHIWQLDVGQGLAVLVRTRHHNLLYDAGPRFGDADVGERVVLPTLRKLGVRKLDLMLLSHADADHAGGA
QAVRNGLATFRVISGDPAALPVALEAEACDSGEHWEWDGVRFEVWQWLSAHESNQKSCVLLVEANGERILLTGDIDTHAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRLDMTIYDSAEQGAIRLQL
GAFELPDTQAGHRRYWRDPPAAGP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=549882 C4C32_RS19760 WP_208554856.1 4524785..4527019(-) (comA) [Pseudomonas corrugata strain 3prime]
ATGCGCACAGGGTGGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTCTTTCCGGCATTGCCGCCGTTGTGGCTGGT
CTCCGCGTTGCCGATGCTGGCGCTGATGGTGCTGCCGTTTCGAATGTATCCGCTGGGTTTTTTCCTGTTGGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTTCGCGCTGGACGAGCGCCTGCCGGCGTTGCTGGATGGCGAAACCCGTTGGGTCGAAGGG
CGTGTCACCGGGTTGCCGCACTACAGTGACGGCGTGGTGCGCTTCGATCTGGTCGAGGCACGATCGCGTCGCACCCGGCT
ACCGACGTCAATGCGTCTGGCCTGGTTCGGGGGGGCACCGGTGAGCAGTGGCGAGCATTGGCGGTTGGCGGTGAAACTGA
AGCGGCCCGCCGGGCTGATGAACCCGCACGGTTTTGACCATGAAGCCTGGTTGCTGAGTCGAGGCATTGGCGCAACCGGT
ACGGTCAAGGATGGTCGTCGTTTGCAACCGGCCCAGGGGGCTTGGCGCGACGGGGTACGCCAGGCACTGGCACAGGTCGA
TGCCCAAGGCCGCTCCGGTGCGCTGATGGCATTGGTCCTGGGCGATGGCGGCGGGTTGAGCCGTGAAGACTGGCAGGTGC
TGCAAGACACCGGCACGGTCCATCTGCTGGTCATTTCCGGACAACACATCGGCTTGCTTGCCGGCCTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCGTGTGGCCGGGGCGTCTGCCATGGTTACCGTGGGCCTGTGCCCTGGCCTTCTTCGC
GGCCCTGGGCTACGGCTTGCTTGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCAATGATTGGCCTGGTGCTGCTGT
GGCGCTTGCGCTTCAAGCACCCCGATCCCTGGTGGGCGTGGCTGCTGGCTTTCGATGGCGTGCTGCTGTTCGATCCTTTG
GCCAGCCTGCGGCCGGGATTCTGGCTGTCATTTGCCGCAGTCGCAGTACTGATGTTCACCTTCGGCGGGCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGTTGGTGGCAGTCGGATTGTGCCCGTTGTTGCTGATATTGGGCC
TGCCCGTGAGCCTCAGCGGGCCGCTGGTGAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTACTGCCGTCGGCGTTG
CTCGGCACGGTATTGCTGCCGGTGCCGTTCATCGGTGAAGCGCTGCTATGGATCGCCGGGGGGTTGCTCGACCTGATGTT
CGAGGGGCTCGCGCTGGTGGCCGGGCGAGTGCCGGTCTGGGTCCCCGTTCCGGTCCCTCTGTGGACGTGGTGCATCGCAG
CGCTCGGCGCCTTTGTGCTGTTATTGCCCAAGGGCGTGCCGCTGCGTCTACTGGGGTGGCCGATGTTGCTGCTGATGGTA
TTTGCACCACGGGAAGAGGTGCCGTCAGGGCGAGCGCATATCTGGCAACTCGACGTTGGCCAGGGGCTGGCAGTGCTGGT
GCGCACCCGTCACCACAACCTGCTCTATGACGCAGGACCACGTTTCGGCGATGCCGATGTGGGCGAGCGTGTCGTGCTAC
CGACCTTGCGCAAACTGGGAGTGCGGAAGCTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCCGGCGGTGCC
CAGGCCGTGCGTAACGGGCTGGCAACGTTCCGGGTAATCAGCGGCGATCCGGCCGCGTTGCCCGTCGCCCTTGAAGCTGA
GGCCTGCGACAGCGGCGAACATTGGGAATGGGACGGCGTGCGCTTCGAAGTGTGGCAATGGTTGTCGGCCCATGAAAGCA
ACCAGAAATCCTGCGTCTTGCTGGTCGAGGCCAACGGTGAACGGATCCTGTTGACCGGCGACATCGATACCCATGCCGAG
CGCGCGTTGCTCGATGGCCCCCTGGCAGTGCCGACCCAGTGGCTGGCTGCGCCCCACCATGGCAGCCGCAGCTCATCGTC
GATGGCGTTGCTGTCGCGCCTCAAGCCACATTCGGTGTTGATCTCCCGGGGCCAGGGCAACGCGTTTGGCCATCCGCATC
CTCAGGTGATGGCCCGGTATCGACGGTTGGACATGACGATCTACGACAGTGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGGGCCTTCGAGCTGCCGGATACCCAGGCCGGCCACCGGCGCTACTGGCGTGACCCGCCGGCTGCGGGGCCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.196

96.237

0.579