Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4C32_RS19755 Genome accession   NZ_CP072011
Coordinates   4523955..4524590 (-) Length   211 a.a.
NCBI ID   WP_162164403.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain 3prime     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4518955..4529590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C32_RS19720 (C4C32_19720) - 4519334..4519804 (-) 471 WP_024776917.1 (2Fe-2S)-binding protein -
  C4C32_RS19725 (C4C32_19725) murB 4520070..4521089 (-) 1020 WP_208554855.1 UDP-N-acetylmuramate dehydrogenase -
  C4C32_RS19730 (C4C32_19730) - 4521086..4521550 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  C4C32_RS19735 (C4C32_19735) kdsB 4521550..4522314 (-) 765 WP_053190745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4C32_RS19740 (C4C32_19740) - 4522311..4522496 (-) 186 WP_003179363.1 Trm112 family protein -
  C4C32_RS19745 (C4C32_19745) lpxK 4522520..4523530 (-) 1011 WP_024776921.1 tetraacyldisaccharide 4'-kinase -
  C4C32_RS19750 (C4C32_19750) - 4523530..4523958 (-) 429 WP_024776922.1 biopolymer transporter ExbD -
  C4C32_RS19755 (C4C32_19755) exbB 4523955..4524590 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4C32_RS19760 (C4C32_19760) comA 4524785..4527019 (-) 2235 WP_208554856.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4C32_RS19765 (C4C32_19765) - 4527165..4527680 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  C4C32_RS19770 (C4C32_19770) - 4527821..4528600 (-) 780 WP_024776926.1 ABC transporter permease -
  C4C32_RS19775 (C4C32_19775) - 4528597..4529529 (-) 933 WP_024776927.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22798.83 Da        Isoelectric Point: 8.0840

>NTDB_id=549881 C4C32_RS19755 WP_162164403.1 4523955..4524590(-) (exbB) [Pseudomonas corrugata strain 3prime]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRSSSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGVSTNASALAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=549881 C4C32_RS19755 WP_162164403.1 4523955..4524590(-) (exbB) [Pseudomonas corrugata strain 3prime]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTTAACAAGGACAAGCTCAAGGAGCTGCGGTCCAGTTCGCCATTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATAGAGGAAGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGTACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGATCCGGCGTAAGTACCAATGCCTCGGCGTTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCATCGATTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844