Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4Z28_RS03640 Genome accession   NZ_CP071994
Coordinates   790638..791033 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain AZ22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 785638..796033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z28_RS03615 (J4Z28_000727) - 787057..787461 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  J4Z28_RS03620 (J4Z28_000728) - 787610..787843 (+) 234 WP_002456242.1 DUF1146 family protein -
  J4Z28_RS03625 (J4Z28_000729) murA 787953..789218 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  J4Z28_RS03630 (J4Z28_000730) fabZ 789252..789689 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  J4Z28_RS03635 (J4Z28_000731) - 790007..790447 (-) 441 WP_001829935.1 YwpF-like family protein -
  J4Z28_RS03640 (J4Z28_000732) ssb 790638..791033 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  J4Z28_RS03645 (J4Z28_000733) - 791421..792080 (+) 660 WP_001829904.1 transglycosylase family protein -
  J4Z28_RS03650 (J4Z28_000734) tenA 792364..793053 (+) 690 WP_001829894.1 thiaminase II -
  J4Z28_RS03655 (J4Z28_000735) thiD 793046..793867 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  J4Z28_RS03660 (J4Z28_000736) thiM 793860..794648 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  J4Z28_RS03665 (J4Z28_000737) thiE 794654..795292 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=549844 J4Z28_RS03640 WP_002457121.1 790638..791033(+) (ssb) [Staphylococcus epidermidis strain AZ22]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=549844 J4Z28_RS03640 WP_002457121.1 790638..791033(+) (ssb) [Staphylococcus epidermidis strain AZ22]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733