Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   J4Z27_RS08780 Genome accession   NZ_CP071992
Coordinates   1874553..1875128 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CBPA-ST-11003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869553..1880128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z27_RS08730 (J4Z27_001739) - 1869696..1869911 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  J4Z27_RS12535 - 1870014..1870130 (+) 117 WP_350481929.1 SAR1012 family small protein -
  J4Z27_RS08735 (J4Z27_001740) - 1870563..1870721 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  J4Z27_RS08740 (J4Z27_001741) - 1870791..1871408 (-) 618 WP_002458044.1 LysE/ArgO family amino acid transporter -
  J4Z27_RS08745 (J4Z27_001742) - 1871412..1872359 (-) 948 WP_002446126.1 fatty acid desaturase family protein -
  J4Z27_RS08750 (J4Z27_001743) - 1872584..1872805 (-) 222 WP_002446125.1 hypothetical protein -
  J4Z27_RS08755 (J4Z27_001744) - 1872826..1872942 (-) 117 WP_002458042.1 hypothetical protein -
  J4Z27_RS08760 mobV 1873024..1873481 (-) 458 Protein_1694 MobV family relaxase -
  J4Z27_RS08780 (J4Z27_001749) comK/comK1 1874553..1875128 (-) 576 WP_001829272.1 competence protein ComK Regulator
  J4Z27_RS08785 (J4Z27_001750) - 1875343..1875561 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  J4Z27_RS08790 (J4Z27_001751) - 1875639..1876625 (-) 987 WP_002446122.1 lipoate--protein ligase -
  J4Z27_RS08795 (J4Z27_001752) - 1876830..1877015 (+) 186 WP_001829339.1 YkvS family protein -
  J4Z27_RS08800 (J4Z27_001753) - 1877021..1877623 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  J4Z27_RS08805 (J4Z27_001754) - 1877726..1879231 (-) 1506 WP_002458038.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=549829 J4Z27_RS08780 WP_001829272.1 1874553..1875128(-) (comK/comK1) [Staphylococcus epidermidis strain CBPA-ST-11003]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=549829 J4Z27_RS08780 WP_001829272.1 1874553..1875128(-) (comK/comK1) [Staphylococcus epidermidis strain CBPA-ST-11003]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743