Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   J4Z27_RS01520 Genome accession   NZ_CP071992
Coordinates   346393..347289 (+) Length   298 a.a.
NCBI ID   WP_002458293.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CBPA-ST-11003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 341393..352289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z27_RS01500 (J4Z27_000297) - 342079..343623 (+) 1545 WP_145368820.1 NAD(P)H-binding protein -
  J4Z27_RS01505 (J4Z27_000298) - 343746..345215 (-) 1470 WP_002458296.1 alkaline phosphatase -
  J4Z27_RS01510 (J4Z27_000299) - 345512..345691 (+) 180 WP_002458295.1 hypothetical protein -
  J4Z27_RS01515 (J4Z27_000300) braR 345722..346387 (+) 666 WP_002475664.1 response regulator transcription factor Regulator
  J4Z27_RS01520 (J4Z27_000301) braS 346393..347289 (+) 897 WP_002458293.1 sensor histidine kinase Regulator
  J4Z27_RS01525 (J4Z27_000302) - 347400..348149 (+) 750 WP_002490898.1 ABC transporter ATP-binding protein -
  J4Z27_RS01530 (J4Z27_000303) - 348151..350163 (+) 2013 WP_020363891.1 FtsX-like permease family protein -
  J4Z27_RS01535 (J4Z27_000304) - 350267..350857 (+) 591 WP_020363892.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34930.56 Da        Isoelectric Point: 6.7015

>NTDB_id=549805 J4Z27_RS01520 WP_002458293.1 346393..347289(+) (braS) [Staphylococcus epidermidis strain CBPA-ST-11003]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEYELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=549805 J4Z27_RS01520 WP_002458293.1 346393..347289(+) (braS) [Staphylococcus epidermidis strain CBPA-ST-11003]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAATATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGGCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACCGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597