Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   J4Z27_RS00195 Genome accession   NZ_CP071992
Coordinates   41798..43147 (-) Length   449 a.a.
NCBI ID   WP_233932042.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CBPA-ST-11003     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36798..48147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z27_RS00165 (J4Z27_000033) - 37528..37974 (-) 447 WP_233932034.1 JAB domain-containing protein -
  J4Z27_RS00170 (J4Z27_000034) - 37995..38501 (-) 507 WP_233932036.1 DUF1643 domain-containing protein -
  J4Z27_RS00175 (J4Z27_000035) - 38517..38828 (-) 312 WP_233932037.1 DUF960 family protein -
  J4Z27_RS00180 (J4Z27_000036) - 38924..39262 (-) 339 WP_233932039.1 SAUGI family uracil-DNA glycosylase inhibitor -
  J4Z27_RS00185 (J4Z27_000037) - 39817..40104 (+) 288 WP_233932040.1 hypothetical protein -
  J4Z27_RS00190 (J4Z27_000038) ccrB 40149..41777 (-) 1629 WP_233932041.1 cassette chromosome recombinase CcrB Machinery gene
  J4Z27_RS00195 (J4Z27_000039) ccrA 41798..43147 (-) 1350 WP_233932042.1 cassette chromosome recombinase CcrA Machinery gene
  J4Z27_RS00200 (J4Z27_000040) - 43325..43582 (-) 258 WP_233932043.1 hypothetical protein -
  J4Z27_RS00205 (J4Z27_000041) cch1 43650..45434 (-) 1785 WP_233932044.1 cassette chromosome replicative helicase -
  J4Z27_RS00210 (J4Z27_000042) - 45460..45699 (-) 240 WP_031920595.1 hypothetical protein -
  J4Z27_RS00215 (J4Z27_000043) - 45932..47470 (-) 1539 WP_233932045.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52507.38 Da        Isoelectric Point: 10.1189

>NTDB_id=549803 J4Z27_RS00195 WP_233932042.1 41798..43147(-) (ccrA) [Staphylococcus epidermidis strain CBPA-ST-11003]
MKQAIGYLRQSTLKQQSLAAQKQTIEALSEKHHIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMNKAFDRLKLNVFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYCYH
NGRFTINKVEAPTVKTVFTYYLKGYGYKKIAQYLEADEKFINRKPYQVRNIIMNPNYCGRVINQYGQYDNMCPSIVSTSI
YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCNSTLTNMTVRKKHHTLRYYVCPKNMNASRFVCEFKGINAKELETSVLAI
CQDFFQNQQLYSKINHTIQQRLKRQRDIERKTTLNHEQLIEKLAQGKMDAETFRKETQSLRQQSKPISSINAHQFQKAFQ
NVIQQRFTLNMLYPYIDEIHITKNKTVTGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=549803 J4Z27_RS00195 WP_233932042.1 41798..43147(-) (ccrA) [Staphylococcus epidermidis strain CBPA-ST-11003]
ATGAAACAAGCAATAGGTTACTTACGTCAGAGTACACTCAAACAACAATCCTTAGCTGCACAGAAACAAACCATCGAGGC
ATTATCCGAAAAACATCACATTCAACACATCACCTTTTATAGTGATAAACAATCAGGACGCACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTATTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGTGTTCATGATGGCTACTTTGA
CATGAATAAAGCTTTCGATCGGTTAAAGCTCAATGTTTTCATCAGTTTAGCTGAACTAGAATCAGATAACATTGGCGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATTACGACACATGCACCGTTTGGCTATTGTTATCAT
AATGGGAGATTCACGATAAACAAGGTAGAGGCACCAACAGTAAAAACTGTGTTCACTTACTACTTAAAAGGCTATGGTTA
TAAAAAAATTGCACAGTACTTAGAAGCTGACGAGAAATTCATCAATCGTAAACCCTACCAAGTACGCAATATCATCATGA
ACCCCAATTATTGTGGTCGAGTCATTAATCAATACGGGCAATATGACAACATGTGTCCTTCTATTGTTTCGACAAGTATA
TATGAACAAGCTCAAGCGATACGTTCACAAAAGCAACTCAAACGGACATCATCAGCTAATCAACTCAAACAAAAAATCAA
ATGTCCATATTGTAATTCGACACTGACTAATATGACTGTTAGAAAAAAGCACCATACCTTACGTTACTATGTCTGTCCAA
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGGATCAACGCAAAGGAACTAGAAACAAGTGTCTTAGCGATT
TGTCAGGACTTCTTTCAAAATCAGCAACTCTATTCAAAAATTAACCATACAATTCAACAACGACTCAAAAGACAAAGAGA
CATAGAAAGGAAAACTACACTCAATCACGAACAGCTGATAGAAAAATTAGCCCAAGGCAAAATGGATGCAGAAACGTTCA
GAAAAGAAACGCAATCATTACGTCAACAATCCAAACCTATATCATCAATCAATGCGCATCAATTTCAAAAAGCTTTTCAA
AATGTCATACAACAACGTTTCACGTTAAACATGTTGTACCCCTACATTGATGAAATTCATATTACCAAAAATAAAACAGT
TACGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACGATGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

86.86

100

0.869
  ccrA Staphylococcus aureus N315

78.619

100

0.786