Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   J4Z27_RS00190 Genome accession   NZ_CP071992
Coordinates   40149..41777 (-) Length   542 a.a.
NCBI ID   WP_233932041.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CBPA-ST-11003     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35149..46777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z27_RS00145 (J4Z27_000029) - 35488..35664 (-) 177 WP_233932028.1 hypothetical protein -
  J4Z27_RS00150 (J4Z27_000030) - 35670..35972 (-) 303 WP_233932029.1 hypothetical protein -
  J4Z27_RS00155 (J4Z27_000031) - 35991..36458 (-) 468 WP_233932031.1 hypothetical protein -
  J4Z27_RS00160 (J4Z27_000032) - 36465..37358 (-) 894 WP_233932033.1 HTH domain-containing protein -
  J4Z27_RS00165 (J4Z27_000033) - 37528..37974 (-) 447 WP_233932034.1 JAB domain-containing protein -
  J4Z27_RS00170 (J4Z27_000034) - 37995..38501 (-) 507 WP_233932036.1 DUF1643 domain-containing protein -
  J4Z27_RS00175 (J4Z27_000035) - 38517..38828 (-) 312 WP_233932037.1 DUF960 family protein -
  J4Z27_RS00180 (J4Z27_000036) - 38924..39262 (-) 339 WP_233932039.1 SAUGI family uracil-DNA glycosylase inhibitor -
  J4Z27_RS00185 (J4Z27_000037) - 39817..40104 (+) 288 WP_233932040.1 hypothetical protein -
  J4Z27_RS00190 (J4Z27_000038) ccrB 40149..41777 (-) 1629 WP_233932041.1 cassette chromosome recombinase CcrB Machinery gene
  J4Z27_RS00195 (J4Z27_000039) ccrA 41798..43147 (-) 1350 WP_233932042.1 cassette chromosome recombinase CcrA Machinery gene
  J4Z27_RS00200 (J4Z27_000040) - 43325..43582 (-) 258 WP_233932043.1 hypothetical protein -
  J4Z27_RS00205 (J4Z27_000041) cch1 43650..45434 (-) 1785 WP_233932044.1 cassette chromosome replicative helicase -
  J4Z27_RS00210 (J4Z27_000042) - 45460..45699 (-) 240 WP_031920595.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62283.10 Da        Isoelectric Point: 9.7487

>NTDB_id=549802 J4Z27_RS00190 WP_233932041.1 40149..41777(-) (ccrB) [Staphylococcus epidermidis strain CBPA-ST-11003]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCNFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSIIYILANPFYIGKIQFAK
YKDWNEKRRKGLNNKPIIADGKHSPIISQDLWDKVQARKQQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQIREIVKSDSVIQQVVERVNQENQVDVAALNHDIAYKQQQLD
EVNIKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIETMDKAQLK
ALYLTVIDRIDIRKDGNHKRQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQILYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=549802 J4Z27_RS00190 WP_233932041.1 40149..41777(-) (ccrB) [Staphylococcus epidermidis strain CBPA-ST-11003]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACAGAAATGCAGAGTACTGAAGGATATAGTAT
CGACGGACAAATCAATCAAATCAGAGAATACTGTAATTTCAATAACTTTGCAGTTGTAGATGTATACGCGGATAGAGGAA
TCTCTGGAAAATCTATGAACCGACCAGAATTACAGCGTTTGTTAAAAGATGCGAACGAAGGTCAAATCGATTCCGTTATG
GTCTACAAAACAAATCGCCTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTTGA
ATTTTTTAGCTTGTCTGAACGTATGGAGGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCCCAAGAAGGCTATTACCAAGGGAAT
TTGCCGCTCGGTTATGACAAAATACCGGATAGTAAACACGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATCTTCGAGTCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCTAATGCGCTCAACCACAAAGGTTATGTCACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAATAATCTACATCTTAGCGAATCCCTTCTATATTGGTAAAATTCAGTTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGTCTGAATAATAAACCAATCATAGCTGACGGTAAGCATTCTCCTATTAT
TAGCCAAGACTTATGGGATAAAGTCCAAGCACGTAAACAACAAGTCAGTCAAAAACCACAAGTTCACGGTAAAGGAACCA
ATCTATTAACCGGTATCGTTCATTGTCCACAATGCGGTGCACCTATGGCAGCAAGTAACACCACTAATACACTCAAAGAT
GGGACCAAGAAACGCATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGTTCAAAGGTATGTTCTGCCAATAGTGT
TAGAGCCGATGTGATTGAAAAATACGTCATGGATCAAATACGTGAAATTGTCAAAAGTGATTCAGTTATACAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCACTTAATCATGATATTGCTTATAAACAACAACAATTGGAT
GAAGTAAACATCAAACTTAAAAATCTCGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCAACAACAAAATCAAGAAAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAGACTATGGACAAAGCTCAGCTCAAA
GCATTATATCTTACAGTCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAGGCAATTCTATGTCACACTCAA
GCTCAATAATGAAATTATCAAACAACTTTTCAATAATACCCCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAATTCTTTACCTTACAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.9

100

0.869