Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   J4Z26_RS00175 Genome accession   NZ_CP071988
Coordinates   46970..48598 (-) Length   542 a.a.
NCBI ID   WP_049371011.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 41970..53598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Z26_RS00155 (J4Z26_000031) - 42391..44265 (+) 1875 WP_162837507.1 DEAD/DEAH box helicase -
  J4Z26_RS00160 (J4Z26_000032) - 45228..45740 (-) 513 WP_049371005.1 DUF1643 domain-containing protein -
  J4Z26_RS00165 (J4Z26_000033) - 45756..46064 (-) 309 WP_049371007.1 DUF960 family protein -
  J4Z26_RS00170 (J4Z26_000034) - 46149..46499 (-) 351 WP_049371009.1 SAUGI family uracil-DNA glycosylase inhibitor -
  J4Z26_RS00175 (J4Z26_000035) ccrB 46970..48598 (-) 1629 WP_049371011.1 cassette chromosome recombinase CcrB Machinery gene
  J4Z26_RS00180 (J4Z26_000036) ccrA 48619..49968 (-) 1350 WP_049371013.1 cassette chromosome recombinase CcrA Machinery gene
  J4Z26_RS00185 (J4Z26_000037) - 50146..50403 (-) 258 WP_049371015.1 hypothetical protein -
  J4Z26_RS00190 (J4Z26_000038) cch1 50468..52258 (-) 1791 WP_049387333.1 cassette chromosome replicative helicase -
  J4Z26_RS00195 (J4Z26_000039) ssb 52258..52551 (-) 294 WP_037576829.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62697.57 Da        Isoelectric Point: 9.7296

>NTDB_id=549765 J4Z26_RS00175 WP_049371011.1 46970..48598(-) (ccrB) [Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGKIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKDNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPECGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSNKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNKIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=549765 J4Z26_RS00175 WP_049371011.1 46970..48598(-) (ccrB) [Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGGGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTAAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAAAATGTCTTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATCCCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGATAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCAGAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGACCAAATACTTGAAATAGTCAAAAGTAATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATCGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAAAGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAACAATTCTACGTTACACTAAA
ACTTAATAATAAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.424

100

0.854