Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D23_RS01625 Genome accession   NZ_CP071987
Coordinates   340191..340595 (+) Length   134 a.a.
NCBI ID   WP_209614134.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335191..345595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D23_RS01590 (J5D23_01590) - 335363..336301 (-) 939 WP_209614129.1 tetraacyldisaccharide 4'-kinase -
  J5D23_RS01595 (J5D23_01595) - 336298..337080 (-) 783 WP_209614130.1 NAD+ synthase -
  J5D23_RS01605 (J5D23_01605) ilvC 337329..338321 (+) 993 WP_209614131.1 ketol-acid reductoisomerase -
  J5D23_RS01610 (J5D23_01610) minD 338346..339152 (+) 807 WP_209614132.1 septum site-determining protein MinD -
  J5D23_RS01615 (J5D23_01615) minE 339149..339382 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D23_RS01620 (J5D23_01620) dprA 339394..340194 (+) 801 WP_209614133.1 DNA-processing protein DprA Machinery gene
  J5D23_RS01625 (J5D23_01625) dprB 340191..340595 (+) 405 WP_209614134.1 Holliday junction resolvase RuvX Machinery gene
  J5D23_RS01630 (J5D23_01630) - 340829..341500 (+) 672 WP_077367860.1 tetratricopeptide repeat protein -
  J5D23_RS01635 (J5D23_01635) - 341615..341953 (+) 339 WP_077645211.1 hypothetical protein -
  J5D23_RS01640 (J5D23_01640) - 341937..342497 (+) 561 WP_209614135.1 hypothetical protein -
  J5D23_RS01645 (J5D23_01645) - 342599..343480 (-) 882 WP_209614136.1 RluA family pseudouridine synthase -
  J5D23_RS01650 (J5D23_01650) recJ 343480..345030 (-) 1551 WP_209614137.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.76 Da        Isoelectric Point: 8.7220

>NTDB_id=549754 J5D23_RS01625 WP_209614134.1 340191..340595(+) (dprB) [Helicobacter pylori strain MT5136]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGMKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549754 J5D23_RS01625 WP_209614134.1 340191..340595(+) (dprB) [Helicobacter pylori strain MT5136]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTATGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933