Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D25_RS07095 | Genome accession | NZ_CP071986 |
| Coordinates | 1509655..1510230 (+) | Length | 191 a.a. |
| NCBI ID | WP_209553816.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5124 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1504655..1515230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D25_RS07070 (J5D25_07070) | uvrD | 1505346..1507391 (+) | 2046 | WP_209553813.1 | ATP-dependent helicase | - |
| J5D25_RS07075 (J5D25_07075) | flgA | 1507388..1508044 (+) | 657 | WP_209553814.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D25_RS07080 (J5D25_07080) | - | 1508054..1508617 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| J5D25_RS07085 (J5D25_07085) | coaD | 1508617..1509090 (+) | 474 | WP_001169240.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D25_RS07090 (J5D25_07090) | tmk | 1509092..1509667 (+) | 576 | WP_209553815.1 | dTMP kinase | - |
| J5D25_RS07095 (J5D25_07095) | comFC | 1509655..1510230 (+) | 576 | WP_209553816.1 | ComF family protein | Machinery gene |
| J5D25_RS07100 (J5D25_07100) | - | 1510263..1512300 (+) | 2038 | Protein_1409 | N-6 DNA methylase | - |
| J5D25_RS07105 (J5D25_07105) | - | 1512297..1513490 (+) | 1194 | WP_209553817.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21335.00 Da Isoelectric Point: 9.0902
>NTDB_id=549741 J5D25_RS07095 WP_209553816.1 1509655..1510230(+) (comFC) [Helicobacter pylori strain MT5124]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549741 J5D25_RS07095 WP_209553816.1 1509655..1510230(+) (comFC) [Helicobacter pylori strain MT5124]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |