Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D25_RS01665 Genome accession   NZ_CP071986
Coordinates   347307..347750 (+) Length   147 a.a.
NCBI ID   WP_209554053.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342307..352750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS01630 (J5D25_01630) - 342482..343420 (-) 939 WP_209554049.1 tetraacyldisaccharide 4'-kinase -
  J5D25_RS01635 (J5D25_01635) - 343417..344199 (-) 783 WP_097701273.1 NAD+ synthase -
  J5D25_RS01645 (J5D25_01645) ilvC 344451..345443 (+) 993 WP_209554050.1 ketol-acid reductoisomerase -
  J5D25_RS01650 (J5D25_01650) minD 345467..346273 (+) 807 WP_209554051.1 septum site-determining protein MinD -
  J5D25_RS01655 (J5D25_01655) minE 346270..346503 (+) 234 WP_077386752.1 cell division topological specificity factor MinE -
  J5D25_RS01660 (J5D25_01660) dprA 346510..347310 (+) 801 WP_209554052.1 DNA-processing protein DprA Machinery gene
  J5D25_RS01665 (J5D25_01665) dprB 347307..347750 (+) 444 WP_209554053.1 Holliday junction resolvase RuvX Machinery gene
  J5D25_RS01670 (J5D25_01670) - 347942..348301 (+) 360 WP_209554054.1 tetratricopeptide repeat protein -
  J5D25_RS01675 (J5D25_01675) - 348488..348826 (+) 339 WP_000699891.1 hypothetical protein -
  J5D25_RS01680 (J5D25_01680) - 348810..349370 (+) 561 WP_156534390.1 hypothetical protein -
  J5D25_RS01685 (J5D25_01685) - 349503..350384 (-) 882 WP_209554055.1 RluA family pseudouridine synthase -
  J5D25_RS01690 (J5D25_01690) recJ 350384..351934 (-) 1551 WP_209554056.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16419.21 Da        Isoelectric Point: 9.7006

>NTDB_id=549735 J5D25_RS01665 WP_209554053.1 347307..347750(+) (dprB) [Helicobacter pylori strain MT5124]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLGYLGKKNKKLATKDGRLDSLSACRILERYCQQVLKKGLGINSHLKIPPIP

Nucleotide


Download         Length: 444 bp        

>NTDB_id=549735 J5D25_RS01665 WP_209554053.1 347307..347750(+) (dprB) [Helicobacter pylori strain MT5124]
ATGATTTTAGCGTGCGATGTGGGGCTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAGAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACTCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAACAAGAAGCT
CGCCACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAAG
GGCTAGGGATAAATTCTCATTTAAAAATACCCCCTATCCCTTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.667

89.796

0.823