Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5D25_RS00095 Genome accession   NZ_CP071986
Coordinates   14111..14374 (+) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain MT5124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9111..19374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS00070 (J5D25_00070) groES 9399..9755 (-) 357 WP_000671927.1 co-chaperone GroES -
  J5D25_RS00075 (J5D25_00075) dnaG 10038..11717 (+) 1680 WP_209553887.1 DNA primase -
  J5D25_RS00080 (J5D25_00080) - 11714..12766 (+) 1053 WP_209553888.1 MnmA/TRMU family protein -
  J5D25_RS00085 (J5D25_00085) - 12857..13684 (+) 828 WP_209553889.1 DUF5718 family protein -
  J5D25_RS00090 (J5D25_00090) comB2 13830..14111 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  J5D25_RS00095 (J5D25_00095) comB3 14111..14374 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  J5D25_RS00100 (J5D25_00100) comB4 14376..16739 (+) 2364 WP_209553890.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D25_RS00110 (J5D25_00110) - 17044..18384 (+) 1341 WP_209554402.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=549726 J5D25_RS00095 WP_000584973.1 14111..14374(+) (comB3) [Helicobacter pylori strain MT5124]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=549726 J5D25_RS00095 WP_000584973.1 14111..14374(+) (comB3) [Helicobacter pylori strain MT5124]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989