Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5D25_RS00090 Genome accession   NZ_CP071986
Coordinates   13830..14111 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain MT5124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8830..19111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS00070 (J5D25_00070) groES 9399..9755 (-) 357 WP_000671927.1 co-chaperone GroES -
  J5D25_RS00075 (J5D25_00075) dnaG 10038..11717 (+) 1680 WP_209553887.1 DNA primase -
  J5D25_RS00080 (J5D25_00080) - 11714..12766 (+) 1053 WP_209553888.1 MnmA/TRMU family protein -
  J5D25_RS00085 (J5D25_00085) - 12857..13684 (+) 828 WP_209553889.1 DUF5718 family protein -
  J5D25_RS00090 (J5D25_00090) comB2 13830..14111 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  J5D25_RS00095 (J5D25_00095) comB3 14111..14374 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  J5D25_RS00100 (J5D25_00100) comB4 14376..16739 (+) 2364 WP_209553890.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D25_RS00110 (J5D25_00110) - 17044..18384 (+) 1341 WP_209554402.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=549725 J5D25_RS00090 WP_001272686.1 13830..14111(+) (comB2) [Helicobacter pylori strain MT5124]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=549725 J5D25_RS00090 WP_001272686.1 13830..14111(+) (comB2) [Helicobacter pylori strain MT5124]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989