Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D26_RS06955 | Genome accession | NZ_CP071985 |
| Coordinates | 1471085..1471660 (+) | Length | 191 a.a. |
| NCBI ID | WP_209508720.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5119 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1466085..1476660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D26_RS06930 (J5D26_06930) | uvrD | 1466776..1468821 (+) | 2046 | WP_209508717.1 | ATP-dependent helicase | - |
| J5D26_RS06935 (J5D26_06935) | flgA | 1468818..1469474 (+) | 657 | WP_209508718.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D26_RS06940 (J5D26_06940) | - | 1469484..1470047 (+) | 564 | WP_000780097.1 | UbiX family flavin prenyltransferase | - |
| J5D26_RS06945 (J5D26_06945) | coaD | 1470047..1470520 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D26_RS06950 (J5D26_06950) | tmk | 1470522..1471097 (+) | 576 | WP_209508719.1 | dTMP kinase | - |
| J5D26_RS06955 (J5D26_06955) | comFC | 1471085..1471660 (+) | 576 | WP_209508720.1 | ComF family protein | Machinery gene |
| J5D26_RS06960 (J5D26_06960) | - | 1471694..1473730 (+) | 2037 | WP_209508721.1 | N-6 DNA methylase | - |
| J5D26_RS06965 (J5D26_06965) | - | 1473727..1474936 (+) | 1210 | Protein_1362 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21291.84 Da Isoelectric Point: 8.6728
>NTDB_id=549723 J5D26_RS06955 WP_209508720.1 1471085..1471660(+) (comFC) [Helicobacter pylori strain MT5119]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRINNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRINNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549723 J5D26_RS06955 WP_209508720.1 1471085..1471660(+) (comFC) [Helicobacter pylori strain MT5119]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAGTACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTAAACACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATTAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAGTACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTAAACACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATTAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |