Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D20_RS07290 | Genome accession | NZ_CP071984 |
| Coordinates | 1542136..1542711 (+) | Length | 191 a.a. |
| NCBI ID | WP_209527949.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5114 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1537136..1547711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D20_RS07265 (J5D20_07265) | uvrD | 1537828..1539873 (+) | 2046 | WP_209527943.1 | ATP-dependent helicase | - |
| J5D20_RS07270 (J5D20_07270) | flgA | 1539870..1540525 (+) | 656 | Protein_1432 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D20_RS07275 (J5D20_07275) | - | 1540535..1541098 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| J5D20_RS07280 (J5D20_07280) | coaD | 1541098..1541571 (+) | 474 | WP_001169252.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D20_RS07285 (J5D20_07285) | tmk | 1541573..1542148 (+) | 576 | WP_209527946.1 | dTMP kinase | - |
| J5D20_RS07290 (J5D20_07290) | comFC | 1542136..1542711 (+) | 576 | WP_209527949.1 | ComF family protein | Machinery gene |
| J5D20_RS07295 (J5D20_07295) | - | 1542746..1544785 (+) | 2040 | WP_209527952.1 | N-6 DNA methylase | - |
| J5D20_RS07300 (J5D20_07300) | - | 1544782..1545396 (+) | 615 | WP_209527955.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21327.92 Da Isoelectric Point: 8.8897
>NTDB_id=549703 J5D20_RS07290 WP_209527949.1 1542136..1542711(+) (comFC) [Helicobacter pylori strain MT5114]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549703 J5D20_RS07290 WP_209527949.1 1542136..1542711(+) (comFC) [Helicobacter pylori strain MT5114]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |