Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CRI9333_RS19420 Genome accession   NC_019753
Coordinates   4484175..4485749 (-) Length   524 a.a.
NCBI ID   WP_015204872.1    Uniprot ID   K9W4V1
Organism   Crinalium epipsammum PCC 9333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4479175..4490749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI9333_RS26930 - 4479435..4479617 (+) 183 WP_157462357.1 hypothetical protein -
  CRI9333_RS19395 (Cri9333_3960) - 4479595..4480398 (+) 804 WP_015204867.1 ABC transporter ATP-binding protein -
  CRI9333_RS19400 (Cri9333_3961) - 4480580..4481326 (+) 747 WP_015204868.1 ABC transporter ATP-binding protein -
  CRI9333_RS19405 (Cri9333_3962) - 4481433..4482035 (-) 603 WP_015204869.1 glutathione S-transferase N-terminal domain-containing protein -
  CRI9333_RS19410 (Cri9333_3963) - 4482211..4483386 (+) 1176 WP_015204870.1 FAD-dependent oxidoreductase -
  CRI9333_RS19415 (Cri9333_3964) - 4483738..4484052 (+) 315 WP_015204871.1 hypothetical protein -
  CRI9333_RS19420 (Cri9333_3965) radA 4484175..4485749 (-) 1575 WP_015204872.1 DNA repair protein RadA Machinery gene
  CRI9333_RS19425 (Cri9333_3966) rpaB 4485918..4486643 (+) 726 WP_015204873.1 response regulator transcription factor RpaB -
  CRI9333_RS19430 (Cri9333_3967) - 4486761..4487420 (+) 660 WP_015204874.1 cofactor assembly of complex C subunit B -
  CRI9333_RS19435 (Cri9333_3968) - 4487553..4488092 (+) 540 WP_015204875.1 DUF456 domain-containing protein -
  CRI9333_RS19440 (Cri9333_3969) rfbB 4488239..4489348 (-) 1110 WP_015204876.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 56155.48 Da        Isoelectric Point: 4.8245

>NTDB_id=54970 CRI9333_RS19420 WP_015204872.1 4484175..4485749(-) (radA) [Crinalium epipsammum PCC 9333]
MAKPKTSYFCNACGAESSQWFGKCPSCGTYNSLDEQVTTAPGNSTSRNGWQSQPRGNSKSPKSPQPRASIKFADITERDQ
PRWASGYGELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVANSLSHNFRILYVSGEESGQQIKLRASRLGVGNATEEDV
TDNAVSSSVHNASEDGHVTIEADISLVTSSEVVIKPATNDPNLYALAETDLEEILKELESLKPHVAVIDSIQTVYFSSLT
SAPGSVSQVRECTSALMQVAKREDITLLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGATHEIG
VFEMVDRGLREVSNPSELFLGNRDDMAPGTSIVVACEGTRPIVVELQALVSPTSYSSPRRSTTGVDYNRLLQILAVLEKR
VGIPLSKLDVYVASAGGLNVEEPAMDLGIAIAVVASFRDRVVDAGTVLIGEVGLGGQVRGVSQMELRLKEAAKLGFKRAI
IPKGQNFPDVGLEVIQVAKVIDAIVAAIPIQNNIDDEEYDSDEE

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=54970 CRI9333_RS19420 WP_015204872.1 4484175..4485749(-) (radA) [Crinalium epipsammum PCC 9333]
ATGGCAAAGCCAAAAACGTCTTATTTTTGTAACGCCTGCGGTGCAGAATCCTCACAATGGTTTGGGAAATGTCCATCTTG
TGGCACTTACAATTCTTTGGATGAGCAGGTTACTACAGCGCCTGGTAATTCTACTAGCCGCAATGGTTGGCAATCTCAAC
CACGAGGTAATAGTAAATCGCCGAAATCTCCTCAACCGCGAGCTTCAATTAAATTTGCTGATATTACTGAAAGAGACCAA
CCCCGATGGGCATCGGGATACGGAGAGTTAGATAGAGTATTAGGTGGTGGGATTGTTCCAGGTTCTCTAGTATTAATTGG
TGGTGATCCTGGGATTGGTAAATCAACTTTATTGCTTCAAGTAGCTAATAGTTTGTCCCACAATTTCCGCATCCTTTATG
TGTCTGGGGAAGAATCAGGGCAGCAAATTAAGCTTAGGGCTTCTCGCTTGGGTGTGGGGAATGCTACTGAGGAAGATGTA
ACAGATAATGCTGTGTCATCTTCTGTTCATAACGCAAGTGAGGATGGTCATGTAACAATTGAAGCAGATATTAGTTTAGT
AACCTCGTCTGAGGTAGTTATTAAGCCTGCTACTAATGATCCAAATTTGTATGCGTTGGCGGAAACAGATTTAGAGGAGA
TTCTTAAGGAACTGGAATCTTTAAAGCCTCATGTGGCGGTGATTGATAGTATTCAAACTGTTTACTTTTCATCTTTAACA
TCGGCTCCAGGTTCAGTATCTCAGGTGCGGGAATGTACTTCCGCTTTGATGCAGGTGGCGAAGCGTGAAGATATTACGCT
GTTGATTGTAGGTCATGTTACTAAAGAAGGCGCGATCGCAGGACCAAAAGTGCTGGAACATTTAGTTGATACAGTACTGT
ATTTTGAAGGCGATCGCTTTGCTTCTCATCGTCTGCTACGCTCGGTTAAAAACCGCTTTGGTGCTACCCACGAAATCGGC
GTGTTTGAGATGGTTGATCGGGGTTTGCGAGAAGTATCAAACCCTTCAGAGCTATTTTTAGGCAACCGCGATGATATGGC
TCCTGGTACGTCGATTGTGGTGGCGTGTGAAGGTACTCGCCCAATTGTGGTAGAGTTACAAGCTTTGGTAAGTCCAACTA
GCTATTCTTCACCTCGGCGTTCTACTACTGGCGTTGACTATAACCGACTACTACAAATTTTGGCAGTTTTAGAAAAAAGA
GTGGGTATTCCGCTTTCTAAATTGGATGTTTATGTTGCTTCCGCAGGTGGTTTAAATGTTGAAGAACCAGCAATGGATTT
AGGAATTGCGATCGCAGTTGTTGCTAGTTTCCGCGATCGCGTTGTTGATGCTGGTACTGTTTTAATTGGCGAAGTTGGTT
TAGGTGGACAAGTTCGCGGCGTTTCCCAAATGGAATTACGACTTAAAGAAGCTGCCAAATTAGGATTTAAACGCGCAATT
ATACCTAAAGGTCAAAATTTCCCTGACGTTGGGTTAGAAGTTATCCAGGTAGCAAAAGTAATTGATGCGATCGTTGCTGC
TATCCCCATACAAAATAACATTGATGATGAGGAATATGACAGTGATGAGGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(399-483)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(93-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9W4V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.412

97.328

0.481
  radA Streptococcus mitis NCTC 12261

46.392

92.557

0.429
  radA Streptococcus mitis SK321

46.392

92.557

0.429
  radA Streptococcus pneumoniae Rx1

46.392

92.557

0.429
  radA Streptococcus pneumoniae D39

46.392

92.557

0.429
  radA Streptococcus pneumoniae R6

46.392

92.557

0.429
  radA Streptococcus pneumoniae TIGR4

46.392

92.557

0.429

Multiple sequence alignment