Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J5D21_RS06955 Genome accession   NZ_CP071982
Coordinates   1468354..1468929 (-) Length   191 a.a.
NCBI ID   WP_021172520.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463354..1473929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS07985 - 1465054..1465680 (-) 627 WP_420871075.1 restriction endonuclease subunit S -
  J5D21_RS07990 - 1465655..1466287 (-) 633 WP_420871076.1 restriction endonuclease subunit S -
  J5D21_RS06950 (J5D21_06950) - 1466284..1468320 (-) 2037 WP_209611707.1 VRR-NUC domain-containing protein -
  J5D21_RS06955 (J5D21_06955) comFC 1468354..1468929 (-) 576 WP_021172520.1 ComF family protein Machinery gene
  J5D21_RS06960 (J5D21_06960) tmk 1468917..1469492 (-) 576 WP_021172519.1 dTMP kinase -
  J5D21_RS06965 (J5D21_06965) coaD 1469494..1469967 (-) 474 WP_001169252.1 pantetheine-phosphate adenylyltransferase -
  J5D21_RS06970 (J5D21_06970) - 1469967..1470530 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  J5D21_RS06975 (J5D21_06975) flgA 1470540..1471196 (-) 657 WP_209611708.1 flagellar basal body P-ring formation chaperone FlgA -
  J5D21_RS06980 (J5D21_06980) uvrD 1471193..1473238 (-) 2046 WP_209611710.1 ATP-dependent helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21270.83 Da        Isoelectric Point: 8.6742

>NTDB_id=549681 J5D21_RS06955 WP_021172520.1 1468354..1468929(-) (comFC) [Helicobacter pylori strain MT5135]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=549681 J5D21_RS06955 WP_021172520.1 1468354..1468929(-) (comFC) [Helicobacter pylori strain MT5135]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAGGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAACGCTGTTTCATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366