Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D21_RS01645 Genome accession   NZ_CP071982
Coordinates   343685..344089 (+) Length   134 a.a.
NCBI ID   WP_077645212.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338685..349089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS01610 (J5D21_01610) - 338856..339794 (-) 939 WP_209612077.1 tetraacyldisaccharide 4'-kinase -
  J5D21_RS01615 (J5D21_01615) - 339791..340573 (-) 783 WP_209612079.1 NAD+ synthase -
  J5D21_RS01625 (J5D21_01625) ilvC 340823..341815 (+) 993 WP_209612081.1 ketol-acid reductoisomerase -
  J5D21_RS01630 (J5D21_01630) minD 341840..342646 (+) 807 WP_077645214.1 septum site-determining protein MinD -
  J5D21_RS01635 (J5D21_01635) minE 342643..342876 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D21_RS01640 (J5D21_01640) dprA 342888..343688 (+) 801 WP_077645213.1 DNA-processing protein DprA Machinery gene
  J5D21_RS01645 (J5D21_01645) dprB 343685..344089 (+) 405 WP_077645212.1 Holliday junction resolvase RuvX Machinery gene
  J5D21_RS01650 (J5D21_01650) - 344191..344982 (+) 792 WP_209612083.1 tetratricopeptide repeat protein -
  J5D21_RS01655 (J5D21_01655) - 345169..345507 (+) 339 WP_000699891.1 hypothetical protein -
  J5D21_RS01660 (J5D21_01660) - 345491..346051 (+) 561 WP_209612085.1 hypothetical protein -
  J5D21_RS01665 (J5D21_01665) - 346197..347078 (-) 882 WP_209612087.1 RluA family pseudouridine synthase -
  J5D21_RS01670 (J5D21_01670) recJ 347078..348628 (-) 1551 WP_209612089.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15209.68 Da        Isoelectric Point: 9.0849

>NTDB_id=549674 J5D21_RS01645 WP_077645212.1 343685..344089(+) (dprB) [Helicobacter pylori strain MT5135]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLGYLGKKNKRIAIKDGRLDSLSACRILERYCQQVLKKY

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549674 J5D21_RS01645 WP_077645212.1 343685..344089(+) (dprB) [Helicobacter pylori strain MT5135]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAACTCTAGCGTAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAATAAGCGGAT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAAGTTTTAAAAAAGT
ATTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.045

100

0.91