Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D27_RS07140 | Genome accession | NZ_CP071981 |
| Coordinates | 1519410..1519985 (+) | Length | 191 a.a. |
| NCBI ID | WP_021172520.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5111 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1514410..1524985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D27_RS07115 (J5D27_07115) | uvrD | 1515101..1517146 (+) | 2046 | WP_209525798.1 | ATP-dependent helicase | - |
| J5D27_RS07120 (J5D27_07120) | flgA | 1517143..1517799 (+) | 657 | WP_209525799.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D27_RS07125 (J5D27_07125) | - | 1517809..1518372 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| J5D27_RS07130 (J5D27_07130) | coaD | 1518372..1518845 (+) | 474 | WP_209525801.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D27_RS07135 (J5D27_07135) | tmk | 1518847..1519422 (+) | 576 | WP_209525803.1 | dTMP kinase | - |
| J5D27_RS07140 (J5D27_07140) | comFC | 1519410..1519985 (+) | 576 | WP_021172520.1 | ComF family protein | Machinery gene |
| J5D27_RS07145 (J5D27_07145) | - | 1520020..1522059 (+) | 2040 | WP_021186934.1 | N-6 DNA methylase | - |
| J5D27_RS07150 (J5D27_07150) | - | 1522056..1523126 (+) | 1071 | WP_077645324.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21270.83 Da Isoelectric Point: 8.6742
>NTDB_id=549661 J5D27_RS07140 WP_021172520.1 1519410..1519985(+) (comFC) [Helicobacter pylori strain MT5111]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549661 J5D27_RS07140 WP_021172520.1 1519410..1519985(+) (comFC) [Helicobacter pylori strain MT5111]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAGGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAGGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |