Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5D27_RS04955 Genome accession   NZ_CP071981
Coordinates   1070992..1071276 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori strain MT5111     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065992..1076276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D27_RS04935 (J5D27_04935) - 1066627..1067763 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  J5D27_RS07965 - 1067756..1067896 (-) 141 WP_021172022.1 hypothetical protein -
  J5D27_RS04940 (J5D27_04940) - 1067893..1070469 (-) 2577 WP_097707811.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  J5D27_RS04945 (J5D27_04945) - 1070469..1070705 (-) 237 WP_001168537.1 hypothetical protein -
  J5D27_RS04950 (J5D27_04950) comB3 1070717..1070980 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  J5D27_RS04955 (J5D27_04955) comB2 1070992..1071276 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  J5D27_RS04960 (J5D27_04960) - 1071264..1071752 (-) 489 WP_097707814.1 hypothetical protein -
  J5D27_RS04965 (J5D27_04965) - 1071816..1071974 (-) 159 WP_001875779.1 hypothetical protein -
  J5D27_RS04970 (J5D27_04970) - 1071977..1072765 (-) 789 WP_209525465.1 integrase -
  J5D27_RS04975 (J5D27_04975) - 1072841..1073918 (+) 1078 Protein_993 P-type conjugative transfer protein TrbL -
  J5D27_RS04980 (J5D27_04980) - 1073989..1074673 (+) 685 Protein_994 CAAX protease -
  J5D27_RS04985 (J5D27_04985) - 1074752..1075824 (-) 1073 Protein_995 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=549657 J5D27_RS04955 WP_000413637.1 1070992..1071276(-) (comB2) [Helicobacter pylori strain MT5111]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=549657 J5D27_RS04955 WP_000413637.1 1070992..1071276(-) (comB2) [Helicobacter pylori strain MT5111]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553