Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LSG40_RS00255 Genome accession   NZ_CP089236
Coordinates   53417..54040 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain JNQH-PA027     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 48417..59040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG40_RS00220 (LSG40_00220) - 48825..49987 (+) 1163 WP_176704564.1 IS3 family transposase -
  LSG40_RS34095 - 49980..50159 (-) 180 WP_348273033.1 DNA sulfur modification protein DndB -
  LSG40_RS00225 (LSG40_00225) - 50617..51018 (+) 402 WP_202070548.1 hypothetical protein -
  LSG40_RS00230 (LSG40_00230) - 51015..51299 (+) 285 WP_034026426.1 hypothetical protein -
  LSG40_RS00235 (LSG40_00235) - 51412..51603 (+) 192 WP_034026424.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  LSG40_RS00240 (LSG40_00240) - 52213..52437 (+) 225 WP_153575029.1 hypothetical protein -
  LSG40_RS00245 (LSG40_00245) - 52676..53065 (+) 390 WP_034026423.1 DOPA 4,5-dioxygenase family protein -
  LSG40_RS00250 (LSG40_00250) - 53044..53409 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  LSG40_RS00255 (LSG40_00255) letA 53417..54040 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  LSG40_RS00260 (LSG40_00260) trpA 54226..55032 (-) 807 WP_003115801.1 tryptophan synthase subunit alpha -
  LSG40_RS00265 (LSG40_00265) trpB 55029..56237 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  LSG40_RS00270 (LSG40_00270) trpI 56341..57228 (+) 888 WP_003114633.1 trpBA operon transcriptional activator TrpI -
  LSG40_RS00275 (LSG40_00275) - 57329..57544 (+) 216 WP_003097345.1 dodecin -
  LSG40_RS00280 (LSG40_00280) - 57728..57955 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=549657 LSG40_RS00255 WP_003111192.1 53417..54040(-) (letA) [Pseudomonas aeruginosa strain JNQH-PA027]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=549657 LSG40_RS00255 WP_003111192.1 53417..54040(-) (letA) [Pseudomonas aeruginosa strain JNQH-PA027]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362