Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D24_RS07205 | Genome accession | NZ_CP071978 |
| Coordinates | 1532577..1533152 (+) | Length | 191 a.a. |
| NCBI ID | WP_097707995.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5125 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1527577..1538152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D24_RS07180 (J5D24_07180) | uvrD | 1528268..1530313 (+) | 2046 | WP_198994739.1 | DNA helicase UvrD | - |
| J5D24_RS07185 (J5D24_07185) | flgA | 1530310..1530966 (+) | 657 | WP_209507852.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D24_RS07190 (J5D24_07190) | - | 1530976..1531539 (+) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| J5D24_RS07195 (J5D24_07195) | coaD | 1531539..1532012 (+) | 474 | WP_001169251.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D24_RS07200 (J5D24_07200) | tmk | 1532014..1532589 (+) | 576 | WP_097707994.1 | dTMP kinase | - |
| J5D24_RS07205 (J5D24_07205) | comFC | 1532577..1533152 (+) | 576 | WP_097707995.1 | ComF family protein | Machinery gene |
| J5D24_RS07210 (J5D24_07210) | - | 1533184..1535223 (+) | 2040 | WP_097707996.1 | N-6 DNA methylase | - |
| J5D24_RS08410 (J5D24_07215) | - | 1535220..1535864 (+) | 645 | WP_209507853.1 | restriction endonuclease subunit S | - |
| J5D24_RS08415 (J5D24_07220) | - | 1535891..1536454 (+) | 564 | WP_143430775.1 | N-6 DNA methylase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21425.04 Da Isoelectric Point: 8.8897
>NTDB_id=549639 J5D24_RS07205 WP_097707995.1 1532577..1533152(+) (comFC) [Helicobacter pylori strain MT5125]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTIKYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTIKYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549639 J5D24_RS07205 WP_097707995.1 1532577..1533152(+) (comFC) [Helicobacter pylori strain MT5125]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCCACAAATACTATCAAATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCCACAAATACTATCAAATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
37.5 |
100 |
0.377 |