Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D22_RS07120 | Genome accession | NZ_CP071977 |
| Coordinates | 1517056..1517631 (+) | Length | 191 a.a. |
| NCBI ID | WP_209505775.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5105 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1512056..1522631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D22_RS07095 (J5D22_07095) | uvrD | 1512747..1514792 (+) | 2046 | WP_209505771.1 | ATP-dependent helicase | - |
| J5D22_RS07100 (J5D22_07100) | flgA | 1514789..1515445 (+) | 657 | WP_021186932.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D22_RS07105 (J5D22_07105) | - | 1515455..1516018 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| J5D22_RS07110 (J5D22_07110) | coaD | 1516018..1516491 (+) | 474 | WP_001169251.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D22_RS07115 (J5D22_07115) | tmk | 1516493..1517068 (+) | 576 | WP_209505773.1 | dTMP kinase | - |
| J5D22_RS07120 (J5D22_07120) | comFC | 1517056..1517631 (+) | 576 | WP_209505775.1 | ComF family protein | Machinery gene |
| J5D22_RS07125 (J5D22_07125) | - | 1517664..1519703 (+) | 2040 | WP_209505777.1 | N-6 DNA methylase | - |
| J5D22_RS07130 (J5D22_07130) | - | 1519700..1520911 (+) | 1212 | WP_209505779.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21334.96 Da Isoelectric Point: 9.0940
>NTDB_id=549617 J5D22_RS07120 WP_209505775.1 1517056..1517631(+) (comFC) [Helicobacter pylori strain MT5105]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549617 J5D22_RS07120 WP_209505775.1 1517056..1517631(+) (comFC) [Helicobacter pylori strain MT5105]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAGGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |