Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D22_RS01630 Genome accession   NZ_CP071977
Coordinates   344388..344792 (+) Length   134 a.a.
NCBI ID   WP_209506169.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339388..349792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS01595 (J5D22_01595) - 339566..340504 (-) 939 WP_209506162.1 tetraacyldisaccharide 4'-kinase -
  J5D22_RS01600 (J5D22_01600) - 340501..341283 (-) 783 WP_209506164.1 NAD+ synthase -
  J5D22_RS01610 (J5D22_01610) ilvC 341532..342524 (+) 993 WP_209506165.1 ketol-acid reductoisomerase -
  J5D22_RS01615 (J5D22_01615) minD 342548..343354 (+) 807 WP_120906098.1 septum site-determining protein MinD -
  J5D22_RS01620 (J5D22_01620) minE 343351..343584 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D22_RS01625 (J5D22_01625) dprA 343591..344391 (+) 801 WP_209506167.1 DNA-processing protein DprA Machinery gene
  J5D22_RS01630 (J5D22_01630) dprB 344388..344792 (+) 405 WP_209506169.1 Holliday junction resolvase RuvX Machinery gene
  J5D22_RS01635 (J5D22_01635) - 344893..345252 (+) 360 WP_209506171.1 tetratricopeptide repeat protein -
  J5D22_RS01640 (J5D22_01640) - 345439..345777 (+) 339 WP_000699880.1 hypothetical protein -
  J5D22_RS01645 (J5D22_01645) - 345761..346321 (+) 561 WP_021172490.1 hypothetical protein -
  J5D22_RS01650 (J5D22_01650) - 346490..347371 (-) 882 WP_077645210.1 RluA family pseudouridine synthase -
  J5D22_RS01655 (J5D22_01655) recJ 347371..348921 (-) 1551 WP_209506173.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15179.65 Da        Isoelectric Point: 9.0849

>NTDB_id=549608 J5D22_RS01630 WP_209506169.1 344388..344792(+) (dprB) [Helicobacter pylori strain MT5105]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLGYLGKKNKRIAIKDGRLDSLSACRILERYCQQVLKKY

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549608 J5D22_RS01630 WP_209506169.1 344388..344792(+) (dprB) [Helicobacter pylori strain MT5105]
ATGATTTTAGCGTGCGATGTGGGGCTAAAACGCATTGGAATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TTGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAACTCTAGCGTAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAATAAGCGGAT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAAGTTTTAAAAAAGT
ATTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.791

100

0.918