Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J4T92_RS06905 | Genome accession | NZ_CP071975 |
| Coordinates | 1458166..1458741 (+) | Length | 191 a.a. |
| NCBI ID | WP_209552890.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5118 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1453166..1463741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4T92_RS06880 (J4T92_06880) | uvrD | 1453857..1455902 (+) | 2046 | WP_209552887.1 | ATP-dependent helicase | - |
| J4T92_RS06885 (J4T92_06885) | flgA | 1455899..1456555 (+) | 657 | WP_209552888.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J4T92_RS06890 (J4T92_06890) | - | 1456565..1457128 (+) | 564 | WP_000780141.1 | UbiX family flavin prenyltransferase | - |
| J4T92_RS06895 (J4T92_06895) | coaD | 1457128..1457601 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| J4T92_RS06900 (J4T92_06900) | tmk | 1457603..1458178 (+) | 576 | WP_209552889.1 | dTMP kinase | - |
| J4T92_RS06905 (J4T92_06905) | comFC | 1458166..1458741 (+) | 576 | WP_209552890.1 | ComF family protein | Machinery gene |
| J4T92_RS06910 (J4T92_06910) | - | 1458775..1460814 (+) | 2040 | WP_209552891.1 | N-6 DNA methylase | - |
| J4T92_RS06915 (J4T92_06915) | - | 1460811..1462082 (+) | 1272 | WP_209552892.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21301.88 Da Isoelectric Point: 8.8873
>NTDB_id=549597 J4T92_RS06905 WP_209552890.1 1458166..1458741(+) (comFC) [Helicobacter pylori strain MT5118]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRTNHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAITLCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRTNHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAITLCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549597 J4T92_RS06905 WP_209552890.1 1458166..1458741(+) (comFC) [Helicobacter pylori strain MT5118]
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGT
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCACCAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCACGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGT
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCACCAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCACGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |