Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BEST7003_RS07855 Genome accession   NZ_AP012496
Coordinates   1550021..1550470 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis BEST7003     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545021..1555470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS07815 (BEST7003_1513) ctaE 1545038..1545661 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BEST7003_RS07820 (BEST7003_1514) ctaF 1545664..1545996 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BEST7003_RS07825 (BEST7003_1515) ctaG 1546023..1546916 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  BEST7003_RS07830 (BEST7003_1516) ylbA 1546948..1547310 (-) 363 WP_003232238.1 YugN family protein -
  BEST7003_RS07835 (BEST7003_1517) ylbB 1547450..1547896 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BEST7003_RS07840 (BEST7003_1518) ylbC 1547980..1549020 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  BEST7003_RS07845 (BEST7003_1519) ylbD 1549252..1549650 (+) 399 WP_003232233.1 YlbD family protein -
  BEST7003_RS07850 (BEST7003_1520) ylbE 1549666..1549905 (+) 240 WP_003232231.1 YlbE-like family protein -
  BEST7003_RS07855 (BEST7003_1521) ylbF 1550021..1550470 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BEST7003_RS07860 (BEST7003_1522) ylbG 1550525..1550797 (+) 273 WP_009967171.1 YlbG family protein -
  BEST7003_RS07865 (BEST7003_1523) rsmD 1551120..1551674 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BEST7003_RS07870 (BEST7003_1524) coaD 1551679..1552164 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BEST7003_RS07875 (BEST7003_1525) spoVV 1552175..1553401 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  BEST7003_RS07880 (BEST7003_1526) ylbK 1553582..1554364 (+) 783 WP_003232221.1 patatin family protein -
  BEST7003_RS07885 (BEST7003_1527) sepM 1554366..1555391 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=54959 BEST7003_RS07855 WP_003221370.1 1550021..1550470(+) (ylbF) [Bacillus subtilis BEST7003]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=54959 BEST7003_RS07855 WP_003221370.1 1550021..1550470(+) (ylbF) [Bacillus subtilis BEST7003]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment