Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J5N61_RS08025 Genome accession   NZ_CP071973
Coordinates   1709466..1709819 (+) Length   117 a.a.
NCBI ID   WP_042106585.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704466..1714819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS07995 (J5N61_07995) - 1704911..1705897 (+) 987 WP_005402538.1 DNA polymerase III subunit delta' -
  J5N61_RS08000 (J5N61_08000) - 1706001..1706747 (+) 747 WP_004912080.1 IS5 family transposase -
  J5N61_RS08005 (J5N61_08005) - 1706984..1707328 (+) 345 WP_005402539.1 PilZ domain-containing protein -
  J5N61_RS08010 (J5N61_08010) - 1707351..1708124 (+) 774 WP_005402540.1 TatD family hydrolase -
  J5N61_RS08015 (J5N61_08015) - 1708163..1708771 (+) 609 WP_020899852.1 TetR/AcrR family transcriptional regulator -
  J5N61_RS08020 (J5N61_08020) - 1708784..1709332 (+) 549 WP_005402541.1 Tfp pilus assembly protein FimT/FimU -
  J5N61_RS08025 (J5N61_08025) xcpV 1709466..1709819 (+) 354 WP_042106585.1 type II secretion system protein Machinery gene
  J5N61_RS08030 (J5N61_08030) xcpW 1709816..1710544 (+) 729 WP_227545354.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J5N61_RS08035 (J5N61_08035) gspK 1710541..1711500 (+) 960 WP_125272498.1 type II secretion system minor pseudopilin GspK -
  J5N61_RS08040 (J5N61_08040) - 1711607..1712203 (+) 597 WP_004954093.1 6-pyruvoyl trahydropterin synthase family protein -
  J5N61_RS08045 (J5N61_08045) ung 1712242..1712955 (+) 714 WP_075696551.1 uracil-DNA glycosylase -
  J5N61_RS08050 (J5N61_08050) - 1712952..1714076 (+) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  J5N61_RS08055 (J5N61_08055) tadA 1714083..1714586 (+) 504 WP_087539688.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12956.93 Da        Isoelectric Point: 9.4883

>NTDB_id=549549 J5N61_RS08025 WP_042106585.1 1709466..1709819(+) (xcpV) [Acinetobacter junii strain INC8271]
MVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVAMNEIATMEINQEWLEGTQSKQVTAQGETWQIDKKAQSTLSPK
IQRIELQVSLYNTEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 354 bp        

>NTDB_id=549549 J5N61_RS08025 WP_042106585.1 1709466..1709819(+) (xcpV) [Acinetobacter junii strain INC8271]
ATGGTTGCTTTAGCTATTTTTGCGGTCGCTGCAATCGCGTTAACTAAAGTAGCTATGCAGTATACCCAATCAACTTCAAA
TGCAATTTTACGTACTAAAGCCCAATTTGTGGCAATGAATGAAATTGCAACCATGGAAATAAATCAAGAGTGGCTTGAGG
GAACACAATCTAAACAAGTGACTGCGCAGGGAGAAACTTGGCAAATCGATAAAAAAGCACAATCAACATTAAGCCCCAAA
ATCCAACGTATCGAGTTACAAGTAAGTTTATATAACACTGAACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATT
CTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.739

98.291

0.803