Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J5N61_RS01495 Genome accession   NZ_CP071973
Coordinates   323957..325387 (-) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 318957..330387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS01480 (J5N61_01480) lptG 319998..321068 (+) 1071 WP_212388859.1 LPS export ABC transporter permease LptG -
  J5N61_RS01485 (J5N61_01485) gpmI 321188..322732 (+) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J5N61_RS01490 (J5N61_01490) - 322742..323917 (+) 1176 WP_212387878.1 S41 family peptidase -
  J5N61_RS01495 (J5N61_01495) pilR 323957..325387 (-) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  J5N61_RS01500 (J5N61_01500) pilS 325410..326975 (-) 1566 WP_042892599.1 sensor histidine kinase Regulator
  J5N61_RS01505 (J5N61_01505) - 326991..327626 (-) 636 WP_004957336.1 response regulator -
  J5N61_RS01510 (J5N61_01510) pbpG 327838..328899 (+) 1062 WP_126132058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  J5N61_RS01515 (J5N61_01515) - 329063..329677 (+) 615 WP_004957343.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=549536 J5N61_RS01495 WP_004917021.1 323957..325387(-) (pilR) [Acinetobacter junii strain INC8271]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=549536 J5N61_RS01495 WP_004917021.1 323957..325387(-) (pilR) [Acinetobacter junii strain INC8271]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTAGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGACTTGATCTCGTTAAACATGTGACTCAAAACTATCCAAACACACCTATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTAAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTCGATCAACTGATTCAAAAAGCATTAAACCGCCCTCAACCAGAGCAAGAGGCGGTAGAAACAG
CCTTAGAAAATAAATTGTTGATTGGTCGTTCAGCTCCTATTCAGCAATTACGCATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTGTTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGACTTATCTTATCTGCACACGGCGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAACATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAGCGTGGTCAAGATATCTTAATT
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGTGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTCACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTCGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49