Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   J4048_RS13010 Genome accession   NZ_CP071970
Coordinates   2686252..2687019 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2681252..2692019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS12990 (J4048_12990) - 2681454..2682266 (-) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -
  J4048_RS12995 (J4048_12995) ccpN 2682292..2682930 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  J4048_RS13000 (J4048_13000) glyS 2683031..2685070 (-) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  J4048_RS13005 (J4048_13005) glyQ 2685063..2685950 (-) 888 WP_040237913.1 glycine--tRNA ligase subunit alpha -
  J4048_RS13010 (J4048_13010) recO 2686252..2687019 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  J4048_RS13015 (J4048_13015) - 2687056..2687199 (-) 144 WP_007408286.1 YqzL family protein -
  J4048_RS13020 (J4048_13020) era 2687355..2688260 (-) 906 WP_007408285.1 GTPase Era -
  J4048_RS13025 (J4048_13025) - 2688241..2688651 (-) 411 WP_003152976.1 cytidine deaminase -
  J4048_RS13030 (J4048_13030) - 2688775..2689149 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  J4048_RS13035 (J4048_13035) ybeY 2689130..2689603 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  J4048_RS13040 (J4048_13040) - 2689604..2691736 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=549502 J4048_RS13010 WP_007408287.1 2686252..2687019(-) (recO) [Bacillus amyloliquefaciens strain XJ5]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=549502 J4048_RS13010 WP_007408287.1 2686252..2687019(-) (recO) [Bacillus amyloliquefaciens strain XJ5]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89