Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAL6303_RS22705 Genome accession   NC_019751
Coordinates   5613122..5614702 (+) Length   526 a.a.
NCBI ID   WP_015200174.1    Uniprot ID   K9V672
Organism   Calothrix sp. PCC 6303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5608122..5619702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL6303_RS22680 (Cal6303_4653) psbU 5608417..5608857 (-) 441 WP_015200169.1 photosystem II complex extrinsic protein PsbU -
  CAL6303_RS22685 (Cal6303_4654) - 5609101..5609754 (-) 654 WP_238993842.1 DUF3120 domain-containing protein -
  CAL6303_RS22690 (Cal6303_4655) - 5610361..5611173 (+) 813 WP_015200171.1 undecaprenyl-diphosphate phosphatase -
  CAL6303_RS22695 (Cal6303_4656) - 5611203..5611862 (-) 660 WP_015200172.1 cofactor assembly of complex C subunit B -
  CAL6303_RS22700 (Cal6303_4657) rpaB 5612226..5612954 (-) 729 WP_015200173.1 response regulator transcription factor RpaB -
  CAL6303_RS22705 (Cal6303_4658) radA 5613122..5614702 (+) 1581 WP_015200174.1 DNA repair protein RadA Machinery gene
  CAL6303_RS22710 (Cal6303_4659) - 5614781..5615737 (-) 957 WP_015200175.1 RNA polymerase sigma factor, RpoD/SigA family -
  CAL6303_RS22715 (Cal6303_4660) carB 5616348..5619599 (-) 3252 WP_015200176.1 carbamoyl-phosphate synthase large subunit -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 56849.80 Da        Isoelectric Point: 5.2917

>NTDB_id=54949 CAL6303_RS22705 WP_015200174.1 5613122..5614702(+) (radA) [Calothrix sp. PCC 6303]
MAKSRTIYVCSQCGHESPQWYGKCPSCGTYNSLEEELTMQVSGDSPSRGVGAWHSQQGQGKAAKKPPQPRYSLKFDQITD
RQVTRWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNELSQRYRVLYVSGEESAQQVKLRASRLGVAKLQN
EVSGQEKEVHQNGNGKSAIVEVIEVKEDVKNNTSKVEVLEGVGADLYILPETDLEEILREIDSLRPNVTVIDSIQTVFFP
SLTSAPGSVGQVRECTAALMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATH
EIGIFEMVSHGLREVPNPSELFLGNRDDPSPGSAITVACEGTRPIVVELQALVSPTSYPSPRRASTGVDYSRLVQILAVL
EKRVGIPMSKLDSYVASVGGLNVEEPAVDLGVAIAIVASFRDRIVDPSTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFK
RAIVPKGTSFPEIGIEILPVAKVIDAIIAAIPQHSLEDSDLEPDDE

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=54949 CAL6303_RS22705 WP_015200174.1 5613122..5614702(+) (radA) [Calothrix sp. PCC 6303]
ATGGCAAAGTCACGCACCATTTACGTTTGCAGTCAATGTGGACACGAGTCACCACAATGGTACGGTAAATGCCCCAGCTG
TGGAACCTATAACTCTCTAGAAGAAGAGCTTACCATGCAGGTGTCGGGTGATTCACCAAGTCGAGGGGTAGGTGCTTGGC
ATAGCCAACAGGGGCAGGGTAAAGCGGCTAAAAAGCCACCACAACCTAGATATTCTCTCAAATTTGACCAAATTACTGAT
CGTCAGGTAACACGTTGGGAATCAGGTTATGGAGAATTAGATCGGGTATTAGGTGGAGGTGTGGTTCCCGGTTCGATGGT
ACTCATCGGTGGTGATCCGGGGATTGGTAAATCTACTTTGTTACTTCAAGTATCAAATGAATTATCACAAAGATACCGAG
TGCTGTATGTTTCGGGAGAAGAATCAGCCCAACAAGTCAAATTAAGGGCTTCACGTTTAGGTGTGGCTAAGTTACAAAAT
GAAGTCAGTGGTCAGGAAAAAGAAGTCCATCAAAATGGGAATGGCAAAAGCGCAATTGTAGAAGTAATAGAAGTCAAGGA
AGATGTCAAAAATAATACTTCTAAAGTTGAAGTTTTAGAAGGAGTTGGGGCTGATTTATATATTTTGCCGGAAACAGATT
TAGAAGAAATACTGAGAGAAATAGATTCCCTCAGACCAAATGTAACGGTAATTGATAGTATTCAAACTGTATTTTTTCCC
AGTTTAACTTCTGCCCCTGGTTCGGTGGGACAGGTGCGGGAATGTACGGCTGCGTTGATGAAGGTGGCAAAGCACGAAGA
TATCACAATGCTAATTGTGGGACATGTAACCAAAGAAGGTGCGATCGCAGGTCCCAAAGTATTGGAACATTTGGTAGATA
CGGTACTTTATTTTGAAGGAGATAGATTTGCATCCCATCGGTTGTTACGAACTGTAAAAAACCGTTTCGGTGCCACCCAC
GAAATTGGTATATTTGAAATGGTTTCGCATGGATTAAGGGAAGTACCAAACCCCTCAGAATTATTTTTAGGCAACCGTGA
TGATCCATCCCCAGGTAGTGCAATTACTGTAGCCTGTGAAGGTACACGTCCCATAGTTGTGGAACTTCAAGCTTTAGTTA
GTCCCACCAGTTACCCCTCACCTAGGAGAGCAAGTACAGGTGTAGATTATAGTCGTCTGGTGCAAATTCTCGCTGTTTTA
GAAAAGCGGGTGGGAATCCCCATGTCCAAACTAGATTCCTATGTTGCTTCCGTCGGTGGATTAAACGTGGAAGAACCAGC
TGTGGATTTGGGTGTTGCTATAGCTATCGTTGCCAGTTTCCGCGATCGCATTGTGGATCCAAGTACTGTATTAATTGGAG
AAGTTGGTTTAGGGGGACAAGTACGTTCAGTTTCTCAGATGGAACTGCGACTTAAAGAAGCTGCCAAATTAGGCTTCAAA
CGCGCTATCGTTCCCAAGGGTACCAGCTTTCCAGAAATTGGTATCGAGATTTTACCAGTTGCCAAAGTCATTGATGCCAT
TATTGCTGCCATCCCCCAACATAGTTTAGAAGATAGCGATTTGGAACCAGATGACGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(423-486)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(89-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9V672

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.805

97.338

0.485
  radA Streptococcus mitis NCTC 12261

46.107

92.776

0.428
  radA Streptococcus pneumoniae Rx1

46.107

92.776

0.428
  radA Streptococcus pneumoniae D39

46.107

92.776

0.428
  radA Streptococcus pneumoniae R6

46.107

92.776

0.428
  radA Streptococcus pneumoniae TIGR4

46.107

92.776

0.428
  radA Streptococcus mitis SK321

46.107

92.776

0.428

Multiple sequence alignment