Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4048_RS08185 Genome accession   NZ_CP071970
Coordinates   1647518..1648417 (+) Length   299 a.a.
NCBI ID   WP_039251514.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1642518..1653417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS08165 (J4048_08165) - 1643208..1644911 (+) 1704 WP_039251516.1 hypothetical protein -
  J4048_RS08170 (J4048_08170) - 1644908..1645189 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  J4048_RS08175 (J4048_08175) sucC 1645364..1646521 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  J4048_RS08180 (J4048_08180) sucD 1646550..1647452 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  J4048_RS08185 (J4048_08185) dprA 1647518..1648417 (+) 900 WP_039251514.1 DNA-processing protein DprA Machinery gene
  J4048_RS08190 (J4048_08190) topA 1648599..1650674 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  J4048_RS08195 (J4048_08195) trmFO 1650739..1652046 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J4048_RS08200 (J4048_08200) xerC 1652116..1653033 (+) 918 WP_039251511.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.07 Da        Isoelectric Point: 8.4593

>NTDB_id=549488 J4048_RS08185 WP_039251514.1 1647518..1648417(+) (dprA) [Bacillus amyloliquefaciens strain XJ5]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=549488 J4048_RS08185 WP_039251514.1 1647518..1648417(+) (dprA) [Bacillus amyloliquefaciens strain XJ5]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368
  dprA Legionella pneumophila strain ERS1305867

43.2

83.612

0.361