Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J5F39_RS00180 Genome accession   NZ_CP071936
Coordinates   33575..34150 (-) Length   191 a.a.
NCBI ID   WP_078241123.1    Uniprot ID   A0A2A6VAL0
Organism   Helicobacter pylori strain MTT03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28575..39150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS00170 - 30301..31497 (-) 1197 WP_283491932.1 restriction endonuclease subunit S -
  J5F39_RS00175 - 31494..33542 (-) 2049 WP_283491933.1 N-6 DNA methylase -
  J5F39_RS00180 comFC 33575..34150 (-) 576 WP_078241123.1 ComF family protein Machinery gene
  J5F39_RS00185 tmk 34138..34713 (-) 576 WP_078241122.1 dTMP kinase -
  J5F39_RS00190 coaD 34715..35188 (-) 474 WP_024118156.1 pantetheine-phosphate adenylyltransferase -
  J5F39_RS00195 - 35188..35751 (-) 564 WP_000780113.1 UbiX family flavin prenyltransferase -
  J5F39_RS00200 flgA 35761..36417 (-) 657 WP_283491934.1 flagellar basal body P-ring formation chaperone FlgA -
  J5F39_RS00205 uvrD 36414..38459 (-) 2046 WP_283491935.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21286.82 Da        Isoelectric Point: 8.4578

>NTDB_id=549273 J5F39_RS00180 WP_078241123.1 33575..34150(-) (comFC) [Helicobacter pylori strain MTT03]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=549273 J5F39_RS00180 WP_078241123.1 33575..34150(-) (comFC) [Helicobacter pylori strain MTT03]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A6VAL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.788

100

0.372