Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LTK17_RS07230 Genome accession   NZ_CP089157
Coordinates   1454730..1455842 (+) Length   370 a.a.
NCBI ID   WP_000775113.1    Uniprot ID   P68863
Organism   Staphylococcus aureus strain UNC_SaCF30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1449730..1460842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK17_RS07205 (LTK17_07205) rnpA 1449993..1450346 (-) 354 WP_001789343.1 ribonuclease P protein component -
  LTK17_RS07210 (LTK17_07210) rpmH 1450467..1450604 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  LTK17_RS07215 (LTK17_07215) dnaA 1451335..1452696 (+) 1362 WP_001290430.1 chromosomal replication initiator protein DnaA -
  LTK17_RS07220 (LTK17_07220) dnaN 1452974..1454107 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  LTK17_RS07225 (LTK17_07225) yaaA 1454488..1454733 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LTK17_RS07230 (LTK17_07230) recF 1454730..1455842 (+) 1113 WP_000775113.1 DNA replication/repair protein RecF Machinery gene
  LTK17_RS07235 (LTK17_07235) gyrB 1455852..1457786 (+) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LTK17_RS07240 (LTK17_07240) gyrA 1457823..1460483 (+) 2661 WP_232043763.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=549255 LTK17_RS07230 WP_000775113.1 1454730..1455842(+) (recF) [Staphylococcus aureus strain UNC_SaCF30]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=549255 LTK17_RS07230 WP_000775113.1 1454730..1455842(+) (recF) [Staphylococcus aureus strain UNC_SaCF30]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P68863

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497