Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LTK17_RS00555 Genome accession   NZ_CP089157
Coordinates   127158..128030 (-) Length   290 a.a.
NCBI ID   WP_000620184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 122158..133030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK17_RS00545 (LTK17_00545) trmFO 123458..124759 (-) 1302 WP_232043827.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LTK17_RS00550 (LTK17_00550) topA 124909..126984 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  LTK17_RS00555 (LTK17_00555) dprA 127158..128030 (-) 873 WP_000620184.1 DNA-processing protein DprA Machinery gene
  LTK17_RS00560 (LTK17_00560) fmhC 128202..129446 (-) 1245 WP_000672864.1 FemA/FemB family glycyltransferase FmhC -
  LTK17_RS00565 (LTK17_00565) - 129474..130591 (-) 1118 Protein_113 LysM peptidoglycan-binding domain-containing protein -
  LTK17_RS00570 (LTK17_00570) sucD 130818..131726 (-) 909 WP_000110252.1 succinate--CoA ligase subunit alpha -
  LTK17_RS00575 (LTK17_00575) sucC 131748..132914 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33547.97 Da        Isoelectric Point: 9.5241

>NTDB_id=549220 LTK17_RS00555 WP_000620184.1 127158..128030(-) (dprA) [Staphylococcus aureus strain UNC_SaCF30]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYRGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEIGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=549220 LTK17_RS00555 WP_000620184.1 127158..128030(-) (dprA) [Staphylococcus aureus strain UNC_SaCF30]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATACCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAGAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAATAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979