Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LTK19_RS12940 Genome accession   NZ_CP089156
Coordinates   2569114..2569986 (+) Length   290 a.a.
NCBI ID   WP_000620184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF35     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2564114..2574986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK19_RS12920 (LTK19_12920) sucC 2564229..2565395 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  LTK19_RS12925 (LTK19_12925) sucD 2565417..2566325 (+) 909 WP_000110252.1 succinate--CoA ligase subunit alpha -
  LTK19_RS12930 (LTK19_12930) - 2566552..2567670 (+) 1119 WP_001041658.1 LysM peptidoglycan-binding domain-containing protein -
  LTK19_RS12935 (LTK19_12935) fmhC 2567698..2568942 (+) 1245 WP_000672864.1 FemA/FemB family glycyltransferase FmhC -
  LTK19_RS12940 (LTK19_12940) dprA 2569114..2569986 (+) 873 WP_000620184.1 DNA-processing protein DprA Machinery gene
  LTK19_RS12945 (LTK19_12945) topA 2570160..2572235 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  LTK19_RS12950 (LTK19_12950) trmFO 2572391..2573698 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33547.97 Da        Isoelectric Point: 9.5241

>NTDB_id=549204 LTK19_RS12940 WP_000620184.1 2569114..2569986(+) (dprA) [Staphylococcus aureus strain UNC_SaCF35]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYRGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEIGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=549204 LTK19_RS12940 WP_000620184.1 2569114..2569986(+) (dprA) [Staphylococcus aureus strain UNC_SaCF35]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATACCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAGAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAATAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979