Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LRO88_RS20865 Genome accession   NZ_CP089148
Coordinates   3834558..3834932 (-) Length   124 a.a.
NCBI ID   WP_159377118.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829558..3839932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS20840 - 3829722..3829883 (-) 162 WP_003227632.1 hypothetical protein -
  LRO88_RS20845 glpX 3830098..3831063 (-) 966 WP_159377117.1 class II fructose-bisphosphatase -
  LRO88_RS20850 murAB 3831094..3832383 (-) 1290 WP_003227628.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LRO88_RS20855 fsa 3832762..3833400 (-) 639 WP_003227626.1 fructose-6-phosphate aldolase -
  LRO88_RS20860 fbaA 3833520..3834377 (-) 858 WP_003243339.1 class II fructose-bisphosphate aldolase -
  LRO88_RS20865 letA 3834558..3834932 (-) 375 WP_159377118.1 sporulation initiation phosphotransferase Spo0F Regulator
  LRO88_RS20870 ywjG 3835098..3835619 (+) 522 WP_014481199.1 DUF2529 domain-containing protein -
  LRO88_RS20875 pyrG 3835701..3837308 (-) 1608 WP_021480821.1 glutamine hydrolyzing CTP synthase -
  LRO88_RS20880 rpoE 3837550..3838071 (-) 522 WP_003227609.1 DNA-directed RNA polymerase subunit delta -
  LRO88_RS20885 acdA 3838254..3839393 (-) 1140 WP_014478272.1 acyl-CoA dehydrogenase AcdA -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14199.67 Da        Isoelectric Point: 4.6400

>NTDB_id=549029 LRO88_RS20865 WP_159377118.1 3834558..3834932(-) (letA) [Bacillus subtilis strain NIB353]
MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVII
MTAYGELDMIQESKELGALTHFAKPFDIDEIKDAVKKYLPLKSN

Nucleotide


Download         Length: 375 bp        

>NTDB_id=549029 LRO88_RS20865 WP_159377118.1 3834558..3834932(-) (letA) [Bacillus subtilis strain NIB353]
ATGATGAATGAAAAAATTTTAATCGTTGATGATCAATACGGCATTCGTATTTTGCTAAATGAAGTGTTCAATAAAGAAGG
CTACCAGACGTTTCAGGCTGCGAACGGCCTGCAGGCGCTTGACATTGTGACAAAAGAACGGCCCGACCTTGTGCTGTTGG
ACATGAAAATTCCCGGCATGGATGGAATCGAAATCTTAAAACGGATGAAGGTCATTGACGAAAACATCCGGGTCATTATC
ATGACGGCATACGGAGAGCTCGACATGATCCAGGAATCGAAGGAATTGGGCGCTCTGACGCACTTTGCCAAGCCGTTTGA
CATCGACGAAATCAAAGACGCCGTCAAAAAATATCTGCCCCTGAAGTCTAACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.462

94.355

0.363
  letA Legionella pneumophila strain ERS1305867

38.462

94.355

0.363