Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MIC7113_RS17220 Genome accession   NC_019738
Coordinates   4129558..4131204 (-) Length   548 a.a.
NCBI ID   WP_390463799.1    Uniprot ID   -
Organism   Allocoleopsis franciscana PCC 7113     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4124558..4136204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIC7113_RS17200 (Mic7113_3571) - 4124728..4125462 (-) 735 WP_015183437.1 hypothetical protein -
  MIC7113_RS17205 (Mic7113_3572) - 4125462..4126838 (-) 1377 WP_015183438.1 AAA family ATPase -
  MIC7113_RS17210 (Mic7113_3573) - 4127092..4127637 (+) 546 Protein_3497 cell division protein FtsK -
  MIC7113_RS17215 (Mic7113_3574) - 4127688..4129367 (-) 1680 WP_015183440.1 aspartate:alanine exchanger family transporter -
  MIC7113_RS17220 (Mic7113_3575) comA 4129558..4131204 (-) 1647 WP_390463799.1 DUF655 domain-containing protein Machinery gene
  MIC7113_RS34815 (Mic7113_3576) - 4131413..4131793 (+) 381 WP_015183442.1 hypothetical protein -
  MIC7113_RS17230 (Mic7113_3577) - 4131931..4133094 (+) 1164 WP_015183443.1 cysteine desulfurase family protein -
  MIC7113_RS17235 (Mic7113_3578) gntT 4133235..4134557 (-) 1323 WP_015183444.1 guanitoxin biosynthesis MATE family efflux transporter GntT -
  MIC7113_RS17240 (Mic7113_3579) - 4134734..4135483 (+) 750 WP_015183445.1 DUF1995 family protein -
  MIC7113_RS39260 - 4135607..4135978 (+) 372 Protein_3504 PAS domain-containing protein -

Sequence

Protein


Download         Length: 548 a.a.        Molecular weight: 60468.52 Da        Isoelectric Point: 6.6395

>NTDB_id=54891 MIC7113_RS17220 WP_390463799.1 4129558..4131204(-) (comA) [Allocoleopsis franciscana PCC 7113]
MHLLSQTLCRLGITFFLTLTVSACQRVQSQLPRKAPLPQDLFVQVYFNHAESGEYTEPYRQVTRPGDDLEQQIVEAIATA
QSTVNIAVQELRLPKIAQALVQRHQAGVKVQVILENTYNRPWSEFTAAEVAKLPARERDRYKEGVKLIDRNGDNQLTPDE
INQRDAIAMLRNAKIPILDDTADGSKGSGLMHHKFVVIDGRTLIVTSANFTTSDMHGDLTNTQTRGNANNLLKIEDSQLA
ELFTQEFNFMWGDGPGGKPDSRFGVKKPFRPAQQVKLGTTTVTVQFSPTSATQPWSQTSNGLIGQTLSTATKTVDLALFV
FSEQSLANLLETNHQQGVQVRGLIDPGFAYRYYSEALDMLGVSLANKCVYEVNNRPWQSPVATIGIPQLPKGDVLHHKFG
IVDGQTVITGSHNWSEAANTHNDETLLVIDSSMVAAHFEREFGRLYAKAVLGVPLAVQQKIQAQKQECPQITEAKEKNAP
TTGELVNLNTATLEELVTLPGVGPKLAQQIIAARQQKPFTSLEDFDRVSGVGPSLLQKLDGRVVFNSF

Nucleotide


Download         Length: 1647 bp        

>NTDB_id=54891 MIC7113_RS17220 WP_390463799.1 4129558..4131204(-) (comA) [Allocoleopsis franciscana PCC 7113]
TTGCATTTACTGTCTCAAACTCTTTGCCGTCTTGGGATAACCTTCTTTCTAACGCTGACGGTGTCGGCTTGTCAGCGAGT
TCAGTCCCAGCTTCCTCGCAAAGCTCCCCTACCTCAAGACCTGTTTGTTCAAGTTTACTTTAATCATGCTGAATCCGGTG
AATACACAGAGCCTTATCGGCAGGTAACTCGACCGGGAGATGATTTAGAGCAACAAATTGTAGAGGCGATCGCCACCGCT
CAATCTACCGTAAATATTGCCGTTCAAGAGTTACGTTTACCCAAAATCGCCCAAGCACTGGTTCAACGTCACCAAGCTGG
GGTGAAAGTCCAAGTCATTCTGGAAAATACCTACAATCGCCCTTGGAGTGAGTTCACTGCTGCTGAAGTCGCCAAACTTC
CGGCACGAGAACGCGATCGCTACAAAGAGGGAGTGAAATTAATCGACCGAAATGGGGATAATCAACTCACTCCGGATGAG
ATTAACCAAAGGGATGCGATCGCCATGTTACGAAACGCTAAAATCCCCATCCTTGACGATACCGCTGATGGTTCCAAAGG
CAGTGGCTTGATGCACCATAAATTTGTCGTCATTGATGGACGCACCCTGATTGTTACCTCTGCGAATTTCACCACCAGTG
ATATGCATGGGGATTTGACAAATACACAAACTCGTGGTAATGCTAATAACCTGTTAAAAATCGAAGATTCCCAGTTAGCC
GAGCTGTTTACCCAAGAATTTAACTTCATGTGGGGGGATGGCCCTGGAGGTAAGCCGGATAGTCGGTTTGGTGTCAAAAA
ACCCTTTCGCCCAGCGCAGCAAGTCAAACTGGGAACCACTACCGTTACCGTGCAGTTTTCCCCAACCTCTGCCACTCAGC
CTTGGAGTCAGACGAGTAATGGCTTAATTGGTCAAACCCTGAGTACGGCGACTAAAACTGTTGATTTAGCCTTGTTTGTC
TTCTCCGAACAGTCCCTCGCTAACCTCCTGGAAACCAACCATCAACAAGGTGTTCAGGTACGAGGGTTAATTGACCCCGG
TTTTGCCTATCGCTATTACAGTGAGGCACTGGATATGCTGGGAGTGTCTTTAGCCAACAAGTGTGTATACGAAGTTAATA
ACCGTCCTTGGCAAAGTCCCGTTGCCACCATTGGCATTCCCCAGTTACCCAAGGGGGATGTCTTACATCACAAATTTGGC
ATTGTAGATGGTCAAACGGTGATTACCGGTTCTCACAATTGGTCAGAGGCAGCGAATACCCACAATGATGAGACATTATT
AGTGATTGATAGCTCAATGGTTGCCGCCCATTTTGAACGGGAGTTTGGACGCCTCTATGCTAAAGCCGTGCTGGGAGTCC
CGTTGGCAGTTCAGCAGAAGATTCAGGCACAAAAGCAAGAATGTCCTCAAATTACTGAGGCGAAAGAGAAGAATGCGCCA
ACGACTGGAGAGTTGGTTAATCTGAATACTGCAACGCTGGAAGAATTAGTGACTTTGCCGGGAGTTGGCCCCAAACTGGC
ACAGCAAATCATCGCCGCACGGCAGCAGAAGCCGTTTACTTCTTTAGAAGACTTTGATCGGGTGTCAGGAGTTGGGCCAA
GTTTGCTACAAAAATTAGATGGACGGGTGGTATTTAATTCGTTTTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(73-251)

PLD-like domain (PLDc_2)

(305-445)

Helix-hairpin-helix motif (HHH_3)

(484-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

53.089

94.526

0.502

Multiple sequence alignment