Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K0768_RS25935 Genome accession   NZ_CP089142
Coordinates   4648954..4650363 (+) Length   469 a.a.
NCBI ID   WP_063084773.1    Uniprot ID   -
Organism   Escherichia coli strain XD35     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4643954..4655363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0768_RS25920 (LS330_25920) typA 4644002..4645825 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  K0768_RS25925 (LS330_25925) glnA 4646198..4647607 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  K0768_RS25930 (LS330_25930) glnL 4647893..4648942 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  K0768_RS25935 (LS330_25935) luxO 4648954..4650363 (+) 1410 WP_063084773.1 nitrogen regulation protein NR(I) Regulator
  K0768_RS25940 (LS330_25940) yshB 4650475..4650585 (+) 111 WP_000893994.1 YshB family small membrane protein -
  K0768_RS25945 (LS330_25945) hemN 4650814..4652187 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  K0768_RS25950 (LS330_25950) yihI 4652376..4652885 (-) 510 WP_001295266.1 Der GTPase-activating protein YihI -
  K0768_RS25955 (LS330_25955) - 4653004..4653170 (-) 167 Protein_4440 hypothetical protein -
  K0768_RS25960 (LS330_25960) yihA 4653467..4654099 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52240.71 Da        Isoelectric Point: 6.3485

>NTDB_id=548883 K0768_RS25935 WP_063084773.1 4648954..4650363(+) (luxO) [Escherichia coli strain XD35]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERQEDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=548883 K0768_RS25935 WP_063084773.1 4648954..4650363(+) (luxO) [Escherichia coli strain XD35]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGAGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCAGTGGCGCTGGTTGAGCGCGCTATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATATTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
CGCCAAAGCGCCGTTTATCGCGCTGAATATGGCAGCTATCCCAAAAGATTTGATCGAATCAGAACTGTTTGGCCACGAGA
AAGGCGCGTTTACTGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCCGATGGCGGTACATTATTCCTCGACGAA
ATTGGTGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCAGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCTGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTACGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39