Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MIC7113_RS13705 Genome accession   NC_019738
Coordinates   3283891..3284256 (-) Length   121 a.a.
NCBI ID   WP_015182767.1    Uniprot ID   K9WEJ6
Organism   Allocoleopsis franciscana PCC 7113     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3278891..3289256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIC7113_RS13700 (Mic7113_2833) - 3281757..3282923 (+) 1167 WP_015182765.1 quinone-dependent dihydroorotate dehydrogenase -
  MIC7113_RS13705 (Mic7113_2835) pilH 3283891..3284256 (-) 366 WP_015182767.1 PleD family two-component system response regulator Machinery gene
  MIC7113_RS13710 (Mic7113_2836) - 3284497..3285165 (+) 669 WP_015182768.1 response regulator transcription factor -
  MIC7113_RS13715 (Mic7113_2837) - 3285295..3285567 (-) 273 Protein_2773 hypothetical protein -
  MIC7113_RS37620 (Mic7113_2838) - 3285624..3286133 (+) 510 WP_015182769.1 hypothetical protein -
  MIC7113_RS13725 (Mic7113_2839) - 3286403..3286849 (+) 447 WP_015182770.1 HNH endonuclease -
  MIC7113_RS38990 (Mic7113_2840) - 3286861..3286993 (+) 133 Protein_2776 element excision factor XisI family protein -
  MIC7113_RS13730 (Mic7113_2841) - 3287126..3287785 (-) 660 WP_015182771.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13504.74 Da        Isoelectric Point: 8.1121

>NTDB_id=54887 MIC7113_RS13705 WP_015182767.1 3283891..3284256(-) (pilH) [Allocoleopsis franciscana PCC 7113]
MSKILVVEDSRTQRYMVTNILTASQFTVTAAKDGIEALEQIGQACPDVVVLDVLMPHLNGYEVCRRLKSNPATKNIPVIM
CSLKCTNADRYWAFKQGADAYVGKPFQPKELIETVQQLLKS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54887 MIC7113_RS13705 WP_015182767.1 3283891..3284256(-) (pilH) [Allocoleopsis franciscana PCC 7113]
ATGAGTAAAATTTTAGTTGTAGAAGACAGCCGTACACAACGTTACATGGTTACCAACATTTTGACGGCAAGTCAGTTTAC
AGTAACCGCCGCCAAGGATGGAATTGAAGCTTTAGAACAAATTGGTCAGGCTTGCCCTGATGTCGTTGTCTTAGATGTTC
TGATGCCTCATCTCAATGGCTACGAAGTTTGCCGTCGCCTCAAATCTAACCCAGCTACCAAGAATATCCCTGTAATTATG
TGTTCTTTAAAATGTACCAATGCTGACCGCTATTGGGCTTTTAAGCAAGGTGCAGATGCTTACGTGGGCAAGCCTTTCCA
ACCTAAAGAGTTGATTGAAACTGTTCAACAGTTGTTAAAATCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9WEJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

57.025

100

0.57
  pilG Acinetobacter baumannii strain A118

37.815

98.347

0.372

Multiple sequence alignment