Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   SPYJRS4_RS07835 Genome accession   NZ_AP012335
Coordinates   1568911..1569513 (-) Length   200 a.a.
NCBI ID   WP_313769763.1    Uniprot ID   -
Organism   Streptococcus pyogenes JRS4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563911..1574513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYJRS4_RS07815 (SPYJRS4_1645) - 1564080..1564685 (-) 606 WP_002982799.1 response regulator transcription factor -
  SPYJRS4_RS07820 (SPYJRS4_1646) - 1564666..1566228 (-) 1563 WP_011184956.1 ATP-binding protein -
  SPYJRS4_RS07825 (SPYJRS4_1647) - 1566268..1568175 (-) 1908 WP_011184957.1 FtsX-like permease family protein -
  SPYJRS4_RS07830 (SPYJRS4_1648) - 1568177..1568914 (-) 738 WP_011184958.1 ABC transporter ATP-binding protein -
  SPYJRS4_RS07835 (SPYJRS4_1649) comA/nlmT 1568911..1569513 (-) 603 WP_313769763.1 ABC transporter ATP-binding protein Regulator
  SPYJRS4_RS07840 (SPYJRS4_1650) - 1569446..1571071 (-) 1626 WP_011184960.1 DUF4135 domain-containing protein -
  SPYJRS4_RS07845 (SPYJRS4_1651) - 1571155..1571310 (-) 156 WP_027968842.1 type A2 lanthipeptide -
  SPYJRS4_RS07850 (SPYJRS4_1652) lacG 1571817..1573223 (-) 1407 WP_011184962.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23092.32 Da        Isoelectric Point: 7.8054

>NTDB_id=54883 SPYJRS4_RS07835 WP_313769763.1 1568911..1569513(-) (comA/nlmT) [Streptococcus pyogenes JRS4]
MGRGKRANLISFYQSPQNITFSKIDKTDFKNISAFVSQDSPIFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIRSMP
MKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPTSALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKIL
IMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 603 bp        

>NTDB_id=54883 SPYJRS4_RS07835 WP_313769763.1 1568911..1569513(-) (comA/nlmT) [Streptococcus pyogenes JRS4]
ATTGGGAGAGGGAAAAGGGCAAATCTTATCAGTTTTTATCAATCTCCTCAGAACATTACCTTCTCTAAAATTGATAAAAC
TGATTTTAAGAATATATCGGCTTTTGTATCTCAAGATTCTCCAATATTTGATGGGGATGTGATGTATAACATTTCGCTAG
GGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAAAAGGGTATCAATATATGATGATATCAGGAGTATGCCA
ATGAAGTTTCATACTCCACTTTTTCGAGATAATCCATCACTATCTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGA
ACTTGTAACCACCCCTAGAATCTTAGTTCTTGACGAACCTACATCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAA
AAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCATAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTA
ATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATTATTTGTACAAAAATAATAAGGATTATTGTGACTTATA
TGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

37.245

98

0.365

Multiple sequence alignment