Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LSP16_RS07735 Genome accession   NZ_CP089067
Coordinates   1609319..1609843 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604319..1614843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS07715 (LSP16_07705) - 1604389..1606857 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  LSP16_RS07720 (LSP16_07710) pilM 1607042..1608106 (+) 1065 WP_219832833.1 type IV pilus biogenesis protein PilM Machinery gene
  LSP16_RS07725 (LSP16_07715) pilN 1608106..1608702 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LSP16_RS07730 (LSP16_07720) pilO 1608699..1609322 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSP16_RS07735 (LSP16_07725) comL/pilP 1609319..1609843 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LSP16_RS07740 (LSP16_07730) pilQ 1609897..1612041 (+) 2145 WP_219832834.1 type IV pilus secretin PilQ Machinery gene
  LSP16_RS07745 (LSP16_07735) aroK 1612053..1612571 (+) 519 WP_003095833.1 shikimate kinase AroK -
  LSP16_RS07750 (LSP16_07740) aroB 1612621..1613727 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=548647 LSP16_RS07735 WP_003095836.1 1609319..1609843(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=548647 LSP16_RS07735 WP_003095836.1 1609319..1609843(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362