Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LSP16_RS07725 Genome accession   NZ_CP089067
Coordinates   1608106..1608702 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1603106..1613702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS07715 (LSP16_07705) - 1604389..1606857 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  LSP16_RS07720 (LSP16_07710) pilM 1607042..1608106 (+) 1065 WP_219832833.1 type IV pilus biogenesis protein PilM Machinery gene
  LSP16_RS07725 (LSP16_07715) pilN 1608106..1608702 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LSP16_RS07730 (LSP16_07720) pilO 1608699..1609322 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSP16_RS07735 (LSP16_07725) comL/pilP 1609319..1609843 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LSP16_RS07740 (LSP16_07730) pilQ 1609897..1612041 (+) 2145 WP_219832834.1 type IV pilus secretin PilQ Machinery gene
  LSP16_RS07745 (LSP16_07735) aroK 1612053..1612571 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=548645 LSP16_RS07725 WP_003095839.1 1608106..1608702(+) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=548645 LSP16_RS07725 WP_003095839.1 1608106..1608702(+) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAATATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369