Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LSP16_RS06200 Genome accession   NZ_CP089067
Coordinates   1281398..1282072 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1276398..1287072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS06185 (LSP16_06160) - 1276944..1279550 (-) 2607 WP_058012869.1 phosphomannomutase/phosphoglucomutase -
  LSP16_RS06190 (LSP16_06165) dut 1279587..1280042 (-) 456 WP_003098293.1 dUTP diphosphatase -
  LSP16_RS06195 (LSP16_06170) coaBC 1280050..1281258 (-) 1209 WP_219832798.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LSP16_RS06200 (LSP16_06175) radC 1281398..1282072 (+) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  LSP16_RS06205 (LSP16_06180) - 1282089..1282637 (-) 549 WP_003098290.1 hypothetical protein -
  LSP16_RS06210 (LSP16_06185) - 1282663..1284244 (-) 1582 Protein_1231 ABC transporter substrate-binding protein -
  LSP16_RS06215 (LSP16_06190) rpmB 1284599..1284835 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  LSP16_RS06220 (LSP16_06195) rpmG 1284847..1285002 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  LSP16_RS06225 (LSP16_06200) - 1285137..1285499 (-) 363 WP_003096551.1 cupin domain-containing protein -
  LSP16_RS06230 (LSP16_06205) - 1285565..1286899 (-) 1335 WP_023090969.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=548635 LSP16_RS06200 WP_003096559.1 1281398..1282072(+) (radC) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=548635 LSP16_RS06200 WP_003096559.1 1281398..1282072(+) (radC) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397