Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   JN057_RS09105 Genome accession   NZ_CP071871
Coordinates   1770447..1771373 (-) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765447..1776373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS09085 (JN057_01857) treR 1766570..1767280 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  JN057_RS09090 (JN057_01858) - 1767313..1768116 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  JN057_RS09095 - 1768129..1769006 (-) 878 Protein_1812 ABC transporter permease -
  JN057_RS09100 (JN057_01861) - 1769018..1769827 (-) 810 Protein_1813 ABC transporter substrate-binding protein -
  JN057_RS09105 (JN057_01863) amiF 1770447..1771373 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  JN057_RS09110 (JN057_01864) amiE 1771384..1772451 (-) 1068 WP_208093481.1 ABC transporter ATP-binding protein Regulator
  JN057_RS09115 (JN057_01865) amiD 1772460..1773386 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  JN057_RS09120 (JN057_01866) amiC 1773386..1774882 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=548633 JN057_RS09105 WP_001291296.1 1770447..1771373(-) (amiF) [Streptococcus pneumoniae strain BVJ1JL]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=548633 JN057_RS09105 WP_001291296.1 1770447..1771373(-) (amiF) [Streptococcus pneumoniae strain BVJ1JL]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCTCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCAGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8U5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844