Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LSP16_RS04460 Genome accession   NZ_CP089067
Coordinates   924335..924958 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 919335..929958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS04435 (LSP16_04400) - 920420..920647 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  LSP16_RS04440 (LSP16_04405) - 920831..921046 (-) 216 WP_003097345.1 dodecin -
  LSP16_RS04445 (LSP16_04410) trpI 921147..922034 (-) 888 WP_003114633.1 trpBA operon transcriptional activator TrpI -
  LSP16_RS04450 (LSP16_04415) trpB 922138..923346 (+) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  LSP16_RS04455 (LSP16_04420) trpA 923343..924149 (+) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  LSP16_RS04460 (LSP16_04425) letA 924335..924958 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  LSP16_RS04465 (LSP16_04430) - 924966..925331 (+) 366 WP_219832777.1 Hpt domain-containing protein -
  LSP16_RS04470 (LSP16_04435) - 925310..925687 (-) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  LSP16_RS04475 (LSP16_04440) - 925698..926597 (-) 900 WP_010792427.1 choline sulfate utilization transcriptional regulator -
  LSP16_RS04480 (LSP16_04445) betC 926725..928236 (+) 1512 WP_030047931.1 choline-sulfatase -
  LSP16_RS04485 (LSP16_04450) - 928253..929176 (+) 924 WP_003115797.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=548623 LSP16_RS04460 WP_003111192.1 924335..924958(+) (letA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=548623 LSP16_RS04460 WP_003111192.1 924335..924958(+) (letA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGATGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362